New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1428170 =	37 (0.740)	4 (0.080)	4/268	6.9	10.0%	coding (557/981 nt)	insH1	IS5 transposase and trans‑activator
	?	NC_000913	1428204 =	37 (0.780)					coding (523/981 nt)	insH1	IS5 transposase and trans‑activator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGC  >  NC_000913/1428065‑1428339                                                                                                                                             |                                                                                                                                        gCATCGGCTAAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTg                                                                                                                                      <  2:550144/143‑1 (MQ=17)  cATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGc                                                                                                                                     <  2:55916/143‑1 (MQ=32)    tCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTTGCCTTCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCa                                                                                                                                   <  2:817200/143‑1 (MQ=255)    tCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCa                                                                                                                                   >  2:387966/1‑143 (MQ=32)      ggCTGAGACAAATTGCTCCTCTCAATCAAGCCGCTGACCCAGCTGATTGAGGTCATGCTCGCTGGCCGCGGTGGTGACCAGGCTGTGGGGCAGGCAACTCTTGGCATCG‑ACACCAATGTGGGCCTTCAGGCCAAAGTGCCAcc                                                                                                                                 >  1:722067/1‑142 (MQ=11)        cTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGa                                                                                                                               <  2:155231/143‑1 (MQ=32)                   tGCTCCTCTCCAGGAGGCAGATTAGCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCtt                                                                                                                    <  1:577369/143‑1 (MQ=12)                    gCTCCTCTCCATGAAGCAGATAACCCGTTTGATTGTGGTATTGCTCTGACCCCGCGGTGGTGACCAGGCAGTCGGTCAGTTCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTg                                                                                                                   <  2:400323/143‑1 (MQ=11)                        ctctCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGAACAGGATGTTGTGCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCCTCATGCCAAAGTGCCTCTGATTGACTTTCTAGGtat                                                                                                               >  2:124743/1‑141 (MQ=11)                            ccATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATg                                                                                                           <  2:643498/143‑1 (MQ=32)                               tGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGCCCACGCACGGCATCGCAGAGCACTG‑ATGCCACCATGCCAAAGTGCCACTGATAGCCTTTCTTGGTCTGATGCAt                                                                                                        >  1:623268/1‑143 (MQ=11)                                                                    gcgCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTagag                                                                   <  2:617073/141‑1 (MQ=17)                                                                        cgcgGTGGTGACCAGTCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                                                               <  1:41881/143‑1 (MQ=17)                                                                        cgcgGTGGTGACCAGGCTGTGGGTCAGGCCACTTTTTGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                                                               <  2:743477/143‑1 (MQ=17)                                                                          tggtgttGTCCAGGTTGTCTGTCTGGTCACTCTTGTCTTCC‑ACTTCATTGTGTGCCTTCATGCCAAAGTGTGACTGTTCGCCTTTCTTTGTCTCTTGCATCTCCTGATCGCTTTGCTGCTTTTTGTTCTTGGTAGAGCTgtgt                                                             <  1:82025/142‑1 (MQ=255)                                                                          cgGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGt                                                             <  2:55604/143‑1 (MQ=32)                                                                            gtggtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGc                                                           <  2:696017/143‑1 (MQ=32)                                                                                    cAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCTatgc                                                   >  2:757806/1‑142 (MQ=17)                                                                                         tgtgGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtg                                              >  1:638213/1‑143 (MQ=32)                                                                                         tgtgGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtg                                              <  2:623268/143‑1 (MQ=32)                                                                                                 aGGGCACTCTGGGCGTCG‑ACACCAGTGTGGGCCTTCAGGCCAAAAGGAGACTTATTGCCTTTCTTGGTCGGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATccac                                      <  2:240089/143‑1 (MQ=11)                                                                                                 aGGCCGCTCTTGGCTTCG‑GCAGCTATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTGTCTTGGTCTGCTGCTGCTCCGGCTCGCGTTGCTGCTCGTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATccac                                      <  1:846894/143‑1 (MQ=11)                                                                                                   gCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTACCCTTATCGGTCTGATGCATCTCCGGACCCCGTCGCTGCCCTTCGTCCTTCGTCGCGCTGCCTGACTCAATGTCGGCAGCATccccca                                    >  1:777189/1‑143 (MQ=0)                                                                                                    ccACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGGCTCGATGATGGTGGCATCCACCaa                                   >  2:764901/1‑143 (MQ=21)                                                                                                     cACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGGTTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGACGGTGGCATCCACCaag                                  >  2:524865/1‑142 (MQ=21)                                                                                                             gCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTg                          >  1:641930/1‑143 (MQ=38)                                                                                                                  g‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGCTCGCCTCCACCAACGTCCCCTGCGtct                     >  2:598954/1‑142 (MQ=11)                                                                                                                  cggcagctaTGTGGGCCTTCGTGCCGGAGTGCCACTGGTTGCCTTTCTTGGTCGGAGGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGtc                      <  1:781712/135‑1 (MQ=14)                                                                                                                   ggcgccgctgtgGGCCTCCCTGCCAAAGTGCCGCTGATTGCCTTGCTTGGTCTGCTGCATCTCCGGATCGCGTTGCTGCGCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGtca                     <  1:257122/135‑1 (MQ=14)                                                                                                                    acacCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTGTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCCCTTTGTTCTTGGTAGAGCTGGGTGACTCAATGATGGTAGACTCGACTAAAATGCATAGGGtcat                    >  1:68721/1‑143 (MQ=11)                                                                                                                      acCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCACAGTGCGttagcggagac                  >  1:517772/1‑134 (MQ=11)                                                                                                                       ccAATGTGGGCCTTCGTGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTcatcat                 <  1:773441/143‑1 (MQ=255)                                                                                                                                gCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTTGCTGCCTCAATGATGGTGGCATCCACCAACGTACCTTGGGGCATCATGACGCCTGc        >  1:775895/1‑143 (MQ=11)                                                                                                                                gCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCaaa                                  <  2:233462/117‑1 (MQ=39)                                                                                                                                gCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCaaa                                  >  1:233462/1‑117 (MQ=39)                                                                                                                                    tCATGACAGAGTGGCACTGATTGCCTGTCTTGGTCTGATGCATCTCCGGGTCGCGTTGCTGCTCTTTGTTCTTGGTAGCGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCg    <  1:406862/143‑1 (MQ=14)                                                                                                                                     cATGCCAAACTGCCACCGATTGCCTTTCTTGGTCTGATGCATCTCCGGAGCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCgg   <  2:810237/143‑1 (MQ=255)                                                                                                                                      ctGCCAAGGCGCCACCGATGGCGCTTCTTGGTCTGCTGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCCCCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgc  <  1:278793/142‑1 (MQ=14)                                                                                                                                      aTGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgc  >  1:340537/1‑143 (MQ=39)                                                                                                                                             |                                                                                                                                        GCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGC  >  NC_000913/1428065‑1428339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.