Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 51 [0] [1] 52 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)50 (1.080) 44/262 0.0 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815800‑3816081
                                                                                                                                            |                                                                                                                                             
gcctgcttgcgaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGt                                                                                                                                             <  2:589286‑M2/3‑1 (MQ=255)
      ttgctaagcgcaaattcaataaactggcgctgatatggttacatgccttagctcatcatctgacttttctacagacaaaaaaaaggccactcatcagtcgccttacacatcagtttgccagcaccgcctcctgaCgtccccgg                                                                                                                                       >  1:387304‑M2/135‑141 (MQ=255)
           aagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                  <  2:527732‑M2/14‑1 (MQ=255)
              cgcaaattcaatacactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                               <  2:69793‑M2/17‑1 (MQ=255)
              cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagccgccttaaaaatcaatttgccagcgccaccctctccCGCCCCCTCCCCATCaa                                                                                                                               >  1:812646‑M2/127‑143 (MQ=255)
                 aaattcaatacactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatga                                                                                                                            <  2:51972‑M2/20‑1 (MQ=255)
                 aaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTcaatta                                                                                                                            >  2:585206‑M2/124‑141 (MQ=255)
                  aattccacaaactggcgctgatatggtttcatgccctcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                           <  2:137608‑M2/21‑1 (MQ=255)
                  aattcaatagactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTTCCCTGCACTTCAatgat                                                                                                                           <  1:808015‑M2/21‑1 (MQ=255)
                   attcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                                          <  2:689954‑M2/22‑1 (MQ=255)
                          aaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgaCGTCCCCTGCACTTCAATGATGCGCCcgc                                                                                                                   >  1:598093‑M2/115‑142 (MQ=255)
                               ggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                              <  2:270847‑M2/34‑1 (MQ=255)
                               ggcgctgatatggtttcatgccttcgctcctcatcttacttgtctacagacaaaaaaaaggcgactcatcagtctccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                              <  1:715442‑M2/34‑1 (MQ=255)
                               ggcgctgatatggtttcatgccttcactcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                              >  2:370431‑M2/110‑143 (MQ=255)
                                  gctgatagggttacatgccgtcgctcctcatcttactttgctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                                                           <  2:514936‑M2/37‑1 (MQ=255)
                                   ctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaacgcgactcatcagtcgccataaaaatcagtttgcccgcgccgccttctgcCGCCCCCTGCACTTCAAGGATgccccggtcgcccgtca                                                                                                          >  1:67629‑M2/106‑135 (MQ=255)
                                    tgatatggtttcatgccttcgctcctcgtcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                                                                         <  1:127542‑M2/39‑1 (MQ=255)
                                      atatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                                                                       >  2:679926‑M2/103‑143 (MQ=255)
                                        atggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACt                                                                                                     >  2:650861‑M2/101‑143 (MQ=255)
                                        atggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGCCCCCTGCCCTTCAATGCTGCCCCCGCCTTCGGTCCTCCCt                                                                                                     >  2:391699‑M2/101‑143 (MQ=255)
                                           gttgcatgacgttgcgcctcatcttgcgtttctgcaggcaagaagaaggcgactcttcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGCCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                                                                                                  <  1:490392‑M2/46‑1 (MQ=255)
                                             ttcatgccatcgctcctcatcttactgttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                                                                <  1:626148‑M2/48‑1 (MQ=255)
                                                  gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGt                                                                                           >  2:226942‑M2/91‑143 (MQ=255)
                                                    cttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtagccttaaaactcagtttgccagcgccgccttctgcCGTCCCCTGCACTCACATGATGCGCCCGCCCTCGGTAATAACTAcgctcacgacg                                                                                         >  1:673705‑M2/89‑138 (MQ=255)
                                                      tcgctcctcatctgaacttgctccacacaaaaaacaggcgactcatcagtcccgctaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATTCCCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                                                                       <  1:511470‑M2/57‑1 (MQ=255)
                                                       cgctcctcatcttacttttctacatacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                                                                      <  2:633640‑M2/58‑1 (MQ=255)
                                                       cgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                                                                      >  2:262310‑M2/86‑143 (MQ=255)
                                                         ctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtctc                                                                                    >  2:207210‑M2/84‑143 (MQ=255)
                                                            ctcatctttcttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGc                                                                                 <  2:519783‑M2/63‑1 (MQ=255)
                                                            ctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGTCCCTTTTCGTTCATCACTACGTTCATGTcgttctcctc                                                                                 >  2:395346‑M2/81‑140 (MQ=255)
                                                                tcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                             <  2:60485‑M2/67‑1 (MQ=255)
                                                                           tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagattgccagcgccgcctgctgcCGTCCCCTGGACTTCAATGCTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGATCTCTGCGGCACGGGCTTCAAc                                                                  >  1:60598‑M2/66‑143 (MQ=255)
                                                                             cagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGt                                                                >  1:271395‑M2/64‑143 (MQ=255)
                                                                                  atttttaaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                           >  2:493944‑M2/59‑143 (MQ=255)
                                                                                  aacaaaaaggcgactcatcagtcgccttaaagatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGACTCTTCAACGTATTcc                                                           <  1:743262‑M2/85‑1 (MQ=255)
                                                                                  aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                           >  2:527069‑M2/59‑143 (MQ=255)
                                                                                   aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCAATTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCa                                                          >  2:539240‑M2/58‑143 (MQ=255)
                                                                                    aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCCTCCCCTGCGCGACAATGATGCGCCCGTCTTCGGTCCTCACTACCTCCATGTCGGTCTCTGCGGCAGAGCCGTCCGCGCATTCcac                                                         >  1:424955‑M2/57‑142 (MQ=255)
                                                                                     tttaaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCGTGTCTGTCTCTGCGGCACAGTCTTCAACGTATTCCAGa                                                        >  2:41994‑M2/56‑143 (MQ=255)
                                                                                                tcatcagtcgccttaacaatcaggttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGc                                             <  2:799104‑M2/99‑1 (MQ=255)
                                                                                                                aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCCTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCACAGTCTTCAACGTATTCCAGAGCGCAAACCCCTTCGCCGTtcaaaact                             >  2:854432‑M2/29‑141 (MQ=255)
                                                                                                                aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGCCTCTGCGGCAGCGTCTTCACCGTATTCCAGACCGCAACCCGCCTCGCCCCTCACACtt                             >  1:832097‑M2/29‑143 (MQ=255)
                                                                                                                    cagtcttccagcgccgccttctgcCGTCCCCTGCACTTCAAGCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCCCTCCGGCACAGTCTTCAACGTACTCCAGCTCGCAAACCGCTTCGCCGTTCACAATTCCGa                         <  1:239727‑M2/119‑1 (MQ=255)
                                                                                                                      gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCAGATCGCAAACAGCTTCGACGTTCACACTACCGact                       >  2:73288‑M2/23‑142 (MQ=255)
                                                                                                                        ttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCAGATCCCCCACCCCTTCGCCGTTCACAATTCCGAAAGa                     >  2:316820‑M2/21‑143 (MQ=255)
                                                                                                                           ccagcgccGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTACATGTCGGGGTCTGCGGCGGAGGATAAAACGTATTCCCGATCGCAAACAGCTTCGCCGTACACAGCTACGACatgaac                  >  1:499545/8‑138 (MQ=255)
                                                                                                                             agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGTCGGTCTCTGCGGCAGAGTCTCCAACGTATTCAAGATAGCGACCCGCTTCGCCGCTCACCACTCCGCCACAACCTg                >  2:595947‑M2/16‑143 (MQ=255)
                                                                                                                              gcgccgccttctgcCGTCCCCAGCACTACAACGACGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGc               <  2:43061‑M2/129‑1 (MQ=255)
                                                                                                                               cgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg              >  2:64798‑M2/14‑143 (MQ=255)
                                                                                                                                 ccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGc            >  2:882143‑M2/12‑143 (MQ=255)
                                                                                                                                 ccgcctcctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCACCCCTACGTTCATGTCGGTCTCTGCGGCAGAGGCTGCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGc            <  2:13666‑M2/132‑1 (MQ=255)
                                                                                                                                           cCGTCCGCCGCAGTTCACTGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGTCGTTCTCTGCGGCAGAGTCTTCTACTTATTCTAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCt  <  1:542853‑M2/142‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                             
AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815800‑3816081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: