New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	7 (0.230)	18 (0.680)	16/252	0.6	76.3%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	5 (0.190)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

CAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209463‑1209741                                                                                                                                            |                                                                                                                                            cAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCACCAACAGGTAATGCAGAGcct                                                                                                                                          <  2:417588‑M2/143‑4 (MQ=255)          tatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGCGccttctcccaca                                                                                                                                 <  2:399667‑M2/143‑13 (MQ=255)          tatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa                                                                                                                                 >  2:289330‑M2/1‑131 (MQ=255)           atttGTCGGATAAGCCTGGGCCAGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCAGTGCAGCCAGCCTGTTGGCGGAGTGGCTCAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaac                                                                                                                                >  1:314682‑M2/1‑130 (MQ=255)                tCGGATAAGCCTTTGCCAGTTCCGGGTATCCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGGACCGGGACACCAACAGGTAATGCAGAGccttctcacaaaccaagg                                                                                                                           <  2:107765‑M2/143‑19 (MQ=255)                     tAAGCCGTGGCCAGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                      <  2:32300/143‑1 (MQ=255)                        gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGCGGCTGAAGGCCACGGAACCGGGACGCCAACAGGTGATGCAGAGccttctcccaaaccaagggactcgag                                                                                                                   <  1:476859‑M2/143‑27 (MQ=255)                               ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgcgagccgtt                                                                                                            <  2:24270‑M2/143‑34 (MQ=255)                                     ccGGGTATGCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca                                                                                                      >  2:504538‑M2/1‑104 (MQ=255)                                       gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt                                                                                                    <  2:150100‑M2/143‑42 (MQ=255)                                        gttATTCCTCAGCATAAAAGGCGGGGCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                   <  1:317617/141‑1 (MQ=255)                                               ttcCGCAGAAAAAGCGGCACCACTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg                                                                                            >  2:463176‑M2/1‑94 (MQ=255)                                                    cagAAAAAGCGGCACCAGTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg                                                                                       >  2:67137‑M2/1‑89 (MQ=255)                                                                  ccATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgg                                                                         >  2:211127‑M2/1‑75 (MQ=255)                                                                          tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcccaacggattcttgc                                                                 <  2:341128‑M2/143‑77 (MQ=255)                                                                                           gCGTAGTGGCTGAAGCCCACGCATCCGGGACACCAACAGGTAATGCAGTGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcg                                                >  1:269372‑M2/1‑50 (MQ=255)                                                                                           gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcg                                                >  2:292097‑M2/1‑50 (MQ=255)                                                                                                   gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGCTTTAACATGCTTATTGGcgacgaac                                        >  1:244676/1‑136 (MQ=255)                                                                                                                         cacCCGCAGGTAAGGCGGAGcgttctcccaagccatggttttcgagagccgtttgcacagtgccatccgatgtgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgc                  >  1:193186‑M2/1‑20 (MQ=255)                                                                                                                            cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcaagatgcaacatttcggcgtaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc               <  2:382215‑M2/143‑127 (MQ=255)                                                                                                                             aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTCATTGGCTACGTACGCGTATCAACAAATGACCAGAAcaca              >  1:270386/1‑143 (MQ=255)                                                                                                                             aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATATAACATGCTTATTGGCTATGTACACGTATCAGCAAATGACCAGAAcaca              >  1:429722/1‑143 (MQ=255)                                                                                                                                 ggTAATGCAGAGccgtctgccgaaccaagggttgggagagccgcttggacagtgccatccgatgtgagatcgccaaacggattcttgcggcttatcagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctc          >  1:36738‑M2/1‑12 (MQ=255)                                                                                                                                       gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggct    <  1:335505‑M2/143‑138 (MQ=255)                                                                                                                                        cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctg   <  2:111130‑M2/143‑139 (MQ=255)                                                                                                                                        cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctg   <  1:298573‑M2/143‑139 (MQ=255)                                                                                                                                         agagccgtctcccaaaccaaggttttcgagagctgcttccacacttccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg  >  1:107765‑M2/1‑4 (MQ=255)                                                                                                                                            |                                                                                                                                            CAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209463‑1209741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.