New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2375833	1 (0.030)	31 (1.060)	21/276	0.4	97.0%	coding (128/963 nt)	menC	O‑succinylbenzoyl‑CoA synthase
	?	NC_000913	2514275 =	NA (NA)					intergenic (+33/‑54)	nupC/insL1	nucleoside (except guanosine) transporter/IS186 transposase

TGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGT  >  NC_000913/2514140‑2514406                                                                                                                                        |                                                                                                                                    tgaaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTGCCATCAgcgc                                                                                                                              >  1:364937/1‑143 (MQ=255) tgaaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATCCCCATCAgcgc                                                                                                                              >  1:76977/1‑143 (MQ=255)   aaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTa                                                                                                                            >  2:142897/1‑143 (MQ=255)    agagCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa                                                                                                                           <  2:261088/143‑1 (MQ=255)                 gtgggtccgcGCTGCGGGCGGAAGCGGGTGTCCGGCTCTGCCCGGGTGAGTGTGCTGTCAGCGTCAACCGCGGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgtg                                                                                                              <  1:256638/134‑1 (MQ=255)                 gTGGTTTTTCGCTTGTGTCTGAGGCTGGTTTACGGCTCTACCCTGGGGAGTGTGCTGTCAGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgtg                                                                                                              <  1:256619/143‑1 (MQ=255)                     tttCGCGCTTCGGTGTGAGGCTGGTTTACGGCTCTACCCTGGTGGGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt                                                                                                          <  1:477937/143‑1 (MQ=255)                      ttCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt                                                                                                         <  2:176683/143‑1 (MQ=255)                      ttCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGAAAATTCCCATAACCGCTAACTTAAGAGCTGTGGTAtt                                                                                                         >  1:147271/1‑143 (MQ=255)                                  tCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATCAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGAGTTGAAGTATTACGCCTGACATg                                                                                             >  1:485585/1‑143 (MQ=39)                                      aaGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGCTGTGGTATTAGGCCTGATATGAgtt                                                                                         >  1:126041/1‑143 (MQ=255)                                                           ctgctgAGTGTGCGGTCTGCGCCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct                                                                    <  1:435202/143‑1 (MQ=255)                                                             ggTGAGTGTGCTGTCTGCGTCAATCGCAGAACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa                                                                  <  2:144784/143‑1 (MQ=255)                                                                  gtgtGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATa                                                             >  2:263510/1‑143 (MQ=255)                                                                           cagggTCAAGCGCAGCAGTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAg                                                    <  1:383374/139‑1 (MQ=255)                                                                             gCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTGTCACGATAACTGGTCAGCa                                                  >  2:467075/1‑143 (MQ=255)                                                                             gCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCa                                                  <  2:509889/143‑1 (MQ=255)                                                                                  tcttacagcaCCAGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTAGTGGGATTACGCCTGATATGATTTAACGCGCCGATGCATTACTCGCACGATAACCGGTCAGCacctct                                             >  1:170016/6‑138 (MQ=18)                                                                                    tCGCAGCAGTGTTGATGTAAGACAATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCTTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                           <  2:322599/143‑1 (MQ=17)                                                                                    tCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTACCTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTGTgg                                           >  2:188632/1‑143 (MQ=255)                                                                                    tCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACCTGCCGATGAATTACTCTCACGATAACTGCTCAGCCATTCTgc                                           >  2:375063/1‑142 (MQ=255)                                                                                    tCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATAATCAAAATCTTTTACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                           <  2:239876/143‑1 (MQ=18)                                                                                                              acataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATACCTGGTCAGCAATTCTGGCACATCTTGGTAAGCCCGACGAAccg                 >  1:131246/1‑141 (MQ=255)                                                                                                                  aaaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAATCTCACGATAACTGGTAAGCAATTCTGGCCAATATTGGTAAGCCCGAAGCACTGGATa             >  1:268209/1‑143 (MQ=255)                                                                                                                       ggctcgtgttacttCCCATTGGCGTTAACTTAAGGTTGGTGGTATTTCGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCCGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCg        <  1:470551/131‑1 (MQ=11)                                                                                                                             ggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGt  >  2:489601/1‑143 (MQ=35)                                                                                                                             cgATACTTCCCATAAGCGCTAACTTAACGGTTGCGTTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGt  <  2:77319/142‑1 (MQ=255)                                                                                                                                        |                                                                                                                                    TGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGT  >  NC_000913/2514140‑2514406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.