New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258674NA (NA)21 (1.000) 20/282 0.1 100% intergenic (+775/‑2) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 1303173 = 0 (0.000)coding (275/921 nt) oppB oligopeptide ABC transporter permease

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258545‑258674
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC  >  NC_000913/1303173‑1303288
                                                                                                                                                                                                                                                       
CGGCGGTGCTTTTGCCGTTCCGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCGTTTTCCCGT                                                                                                         <  2:312141/143‑1
           TTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGCGCACTTCAAAACCACCATCATAAACTAAATCAGTAAGTTGACAGCATCACCCAGTATTCACGTTTCTGCCAAAC                                                                                              >  1:283983/1‑143
              CCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGTGACAGCTGATAGAATTAGTAGCCATTGGAGCACCTCAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGG                                                                                           <  1:383337/143‑1
              CCGTTACGCACAACCCCGTCAGTAGCCGAACAGGATGGACAGCTGATAGAAACAGAATCCACTGGAGCACCTCAAAAACACCATCATACGCTAAAGCGGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGG                                                                                           <  1:99583/143‑1
               CGTTACGCACCACCCCGTCTGTTGCTGAACAAAAGAGTAGAGTAGAAAAAACAAAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGG                                                                                          <  1:380938/143‑1
                       ACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACAGCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTTTCCCGTTTCTGACAAACTGGGCGCCGCcg                                                                                  >  2:242672/1‑141
                               GTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAACAACACCATCATACACTAAATCAGTAAGTTGGCAGCATAACCCAATATTCCCGTTTCTGCCAAACTGTGAGCCGCAGCATTTTTC                                                                          >  1:63203/1‑143
                                      GCTGAAGAGGGGGTACAGCGGATAGAAACACAAGCCACTGGAGCACCTCAAAAACACCTTCATACACTCAATCAGTAAGTTTGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGG                                                                   <  2:69214/143‑1
                                       CTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCCTACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCAGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGT                                                                  >  1:214549/1‑143
                                        TGAACAGGAGGGACAGTTGATAGAAACAGAAGCCATTGTAGCACCTCAAAAATATCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTA                                                                 <  1:240593/143‑1
                                                 agcGACAGCTGATAGAAACAGAAGCCACTGGAGCACGTCAAAAACACCATCATACACTAAAGCAGTAAGTTGGCAGCATCAGTCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGG                                                         <  2:269419/140‑1
                                                 GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCACAAACACCATCATACACCAAATCAGTAAGTTGGCAGCATCACCCAGTTTTACAAAATCAACAAAACAGGAAGCCGAAGCATTTTTCCTTGCGGTAATACTGGGT                                                        >  1:46193/1‑143
                                                     ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCATTGCGGTAATACTGGGTGTT                                                     >  1:123380/1‑143
                                                              AGAATCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGC                                            <  1:315061/143‑1
                                                                               gtccgccaCAAAAACACCATCATAAACTTAATCAGTAAGTTGGCATCTTCTTTTAGTTTTCCTTTTTCTGTCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAA                           <  1:149497/135‑1
                                                                                     CTCAACACCACCGTCAGACACTAAATCAGTAAGTTGGCAGCAGCACCCAGTTTTCCCGTTTCTGCCAAACGGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAA                     <  2:5787/143‑1
                                                                                            ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGAAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCCTCAAAACAAGACACCAAA              >  2:63475/1‑143
                                                                                               CCATCATATACTAATTCAGTAAGTTGGCAGCATCACCTAGTTTTCCCGTTTCTGCGAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGG           <  2:270457/143‑1
                                                                                                     TACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGCAGCATTTTTCCTTGAGGAAATAATGGGTGTTAGAGCTGGCGTTATTGCCGCATTAAAACAAAACACAAAAAGGGACTAT     >  1:178811/1‑143
                                                                                                      ACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTCGAGCTGGCGTTCTTGCTACTTTAAAACCAAACACCAAATGGGACCATA    >  2:284547/1‑143
                                                                                                        ACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACCAAACCCCAAGTGGGACTATACC  >  2:4069/1‑143
                                                                                                                                                                                                                                                       
CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258545‑258674
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC  >  NC_000913/1303173‑1303288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.