| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258674 | NA (NA) | 21 (1.000) | 20/282 | 0.1 | 100% | intergenic (+775/‑2) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 1303173 = | 0 (0.000) | coding (275/921 nt) | oppB | oligopeptide ABC transporter permease | |||||
CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258545‑258674‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC > NC_000913/1303173‑1303288 CGGCGGTGCTTTTGCCGTTCCGCACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCGTTTTCCCGT < 2:312141/143‑1 TTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGCGCACTTCAAAACCACCATCATAAACTAAATCAGTAAGTTGACAGCATCACCCAGTATTCACGTTTCTGCCAAAC > 1:283983/1‑143 CCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG‑TGACAGCTGATAGAATTAGTAGCCATTGGAGCACCTCAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGG < 1:383337/143‑1 CCGTTACGCACAACCCCGTCAGTAGCCGAACAGGAT‑GGACAGCTGATAGAAACAGAATCCACTGGAGCACCTCAAAAACACCATCATACGCTAAAGCGGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGG < 1:99583/143‑1 CGTTACGCACCACCCCGTCTGTTGCTGAACAAAAGAGTAGAGTAGA‑AAAAACAAAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGG < 1:380938/143‑1 ACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACAGCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTTTCCCGTTTCTGACAAACTGGGCGCCGCcg > 2:242672/1‑141 GTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAACAACACCATCATACACTAAATCAGTAAGTTGGCAGCATAACCCAATATTCCCGTTTCTGCCAAACTGTGAGCCGCAGCATTTTTC > 1:63203/1‑143 GCTGAAGAGGGG‑GTACAGCGGATAGAAACACAAGCCACTGGAGCACCTCAAAAACACCTTCATACACTCAATCAGTAAGTTTGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGG < 2:69214/143‑1 CTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCCTACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCAGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGT > 1:214549/1‑143 TGAACAGGAG‑GGACAGTTGATAGAAACAGAAGCCATTGTAGCACCTCAAAAATATCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTA < 1:240593/143‑1 agcGACAGCTGATAGAAACAGAAGCCACTGGAGCACGTCAAAAACACCATCATACACTAAAGCAGTAAGTTGGCAGCATCAGTCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGG < 2:269419/140‑1 G‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCACAAACACCATCATACACCAAATCAGTAAGTTGGCAGCATCACCCAGTTTTACAAAATCAACAAAACAGGAAGCCGAAGCATTTTTCCTTGCGGTAATACTGGGT > 1:46193/1‑143 ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCATTGCGGTAATACTGGGTGTT > 1:123380/1‑143 AGAATCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGC < 1:315061/143‑1 gtccgccaCAAAAACACCATCATAAACTTAATCAGTAAGTTGGCATCTTCTTTTAGTTTTCCTTTTTCTGTCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAA < 1:149497/135‑1 CTCAACACCACCGTCAGACACTAAATCAGTAAGTTGGCAGCAGCACCCAGTTTTCCCGTTTCTGCCAAACGGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAA < 2:5787/143‑1 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGAAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCCTCAAAACAAGACACCAAA > 2:63475/1‑143 CCATCATATACTAATTCAGTAAGTTGGCAGCATCACCTAGTTTTCCCGTTTCTGCGAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGG < 2:270457/143‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGCAGCATTTTTCCTTGAGGAAATAATGGGTGTTAGAGCTGGCGTTATTGCCGCATTAAAACAAAACACAAAAAGGGACTAT > 1:178811/1‑143 ACACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTCGAGCTGGCGTTCTTGCTACTTTAAAACCAAACACCAAATGGGACCATA > 2:284547/1‑143 ACTAAATCAGTAAGTTGGCAGCATCACCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACCAAACCCCAAGTGGGACTATACC > 2:4069/1‑143 CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG‑GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258545‑258674‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC > NC_000913/1303173‑1303288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |