| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1755758 | 1 (0.050) | 23 (1.090) | 19/284 | 0.1 | 95.8% | coding (61/1413 nt) | pykF | pyruvate kinase I |
| ? | NC_000913 | = 2102943 | NA (NA) | intergenic (‑32/+1) | insH1/wbbL | IS5 transposase and trans‑activator/pseudogene, lipopolysaccharide biosynthesis protein | |||||
CGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1755637‑1755758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < NC_000913/2102943‑2102802 CGGCAGTGCTCCCAGAAAGCAAGTATCACCTGTGCTTTTCGACTTAAGTACGAGGACTGTCATGAAAAAGTCCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCT < 2:265265/143‑1 gttcgtccatatAGCAAGTTTCTTCCATCCTTGTCAACTTAAAGATTAAGACGGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATAT < 1:156727/131‑1 ctccCCCAGAAAGCAATTTCCTCCCTTCCTTCTCAACTTAAAGACTAATACTGTGATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATG < 2:326605/139‑1 TGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTACTGAAACAGACCAAAATTGTTCGCACCATCGGACCGAAAACCAAATCTGAGGAGATGTCAGGGAACGAGCGAACAACTCCCTGATAac > 2:281035/1‑141 gacctGAAAGCAAGTTCTTCCGCTCCTTCGCTACTTACAGACTCAGACTGTCATGAAAAAGACCAAAATTGTTGGGACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGA < 2:171885/138‑1 GAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATG < 1:358963/143‑1 AAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACCAAGACTGTCATGAAAAAGACCTAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGAGCATGTT < 2:144620/143‑1 AGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCAGAAGAGATGTTAGAGAAAGAACGAACAAGTCCCTGATATGAGATCATGTTT > 1:41040/1‑143 GTTTCTCCCATCCTTCTCAACTTAAATATTTAGTCTGTCATTAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCAT < 1:209448/143‑1 TTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT < 2:198767/143‑1 CCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCACAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCACTGATATGAGATCATGTTTGTCATCTGGAGC > 1:290838/1‑143 CCTTCTAATATTAAAGTTTAAGATTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATA < 1:163801/143‑1 AACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGG > 2:340393/1‑143 AACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGAAGACATAAAACAGG > 1:106955/1‑143 AAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT < 1:279076/143‑1 agaccaatgCTGGCAGGAAAAAGACCAAAGTGGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGCGCTCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATC < 2:60403/134‑1 AGAATAAGACTGTCATGAAAAAGACCAAAATTTTTTGCACCATAGGAAAGAAAAACGAAGCGGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATC < 1:112358/143‑1 tatagaagcGTCGTGCAAAAGGCCAATAGTGTGTGCACCATGGGACCGAAAACCTGATCTGAAGAGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT < 2:341933/134‑1 ACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTCGGGAAGGTGCGAACAAGTCCCTGATATGAGCTCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAACAT > 2:176392/1‑143 GGACCGAACACCGAGTCTGAGGAGAGGTTGCGCAGGGTGCGAACGAGTCCCTGATTGGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTATCTTCGCCGACAGTGAATTCAGCAGTAA < 2:92083/143‑1 gtattttaattGATGTTAGGGAATGTGTGAACATGTTCCTTATATGAAATCATGTTGGTCATCGGGCGCCAGAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGAC < 1:61337/132‑1 AGATGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATAAATCATCAACTTACCTTCGCCGACAGAGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAG > 1:247604/1‑143 GGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCAGCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < 1:258305/143‑1 CGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1755637‑1755758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < NC_000913/2102943‑2102802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |