| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1979489 | 1 (0.050) | 38 (1.790) | 23/284 | 0.0 | 97.4% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT > NC_000913/1979347‑1979631 | ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagcaaaaatagactcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 2:127616‑M1/4‑1 (MQ=255)ggataacgcctaaaatagcgaagaaacggtctaaataggctgattcaaggaatataaaagaaaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa > 2:206166‑M1/140‑143 (MQ=255) atgtcgccttacatggcggagaaacggtctaaagaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt > 2:310394‑M1/138‑143 (MQ=255) acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa > 1:196003‑M1/135‑143 (MQ=255) taaatggcgaagaaacggtctaaataggctgattcaaggcatttactggagaaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaa > 1:144425‑M1/129‑143 (MQ=255) aaatggctaaaaaacggtctaaataggctgattcaaggcatttacgggagaaaaaattgtctcaaacatgaagaaatgaaataactgagtcaggcgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaag > 1:51134‑M1/128‑143 (MQ=255) taatCGAAATGGGATGTTTCGCACAGTCAATATATCTCATCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAAGACCAGAGAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa < 1:345840‑M1/143‑16 (MQ=255) aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagcaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa < 2:302995‑M1/24‑1 (MQ=255) gaaacggtctaaataggctgattcaaggcatttacgggagaacaaatcggctcaaacctgaagaaatgaaatgacagaaacaaacgagaaaaatttacacgctaattcgcaccttccCTAATTAAATACAAAGAAAGGcaaca < 1:90574‑M1/26‑1 (MQ=255) gggATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTACATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgata < 1:302422‑M1/143‑26 (MQ=255) cggtctaaataggctgattcaaggcatttaagggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCa > 2:51543‑M1/114‑143 (MQ=255) gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgccaattcagcaggatcc‑TAATCAAATACAAAGAAAGGCACCAATCAAc < 2:265899‑M1/31‑1 (MQ=255) gtctaaataggctgattcaaggcatttacgggaaaaaaaaacggctcaaacatgaagaaatgaaatgactgagcaggcggagaagaatttgccagctaattcgcacctaccCTAATTAAATACAAAGACAGACCACGATCAAc < 2:267550‑M1/32‑1 (MQ=255) gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAAAAAAGAAACAATCAACataatgttaa < 1:185835‑M1/42‑1 (MQ=255) gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttaatcgcaccttccCTAATTAAATACAAAGAAAAGCAACAATCAACataatgttaa < 2:37916‑M1/42‑1 (MQ=255) caGTCAAAATAACTCACTGTAAATAATCATCAGCGAAGGGTGAACACCTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt < 1:381019‑M1/143‑39 (MQ=255) gTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCATTACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAATAAggaaggtgagaacaagtccctgatatgagatcatgtttgt > 1:21421‑M1/1‑103 (MQ=255) tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACACACTACggacggtgcgaagaagtccctgatatgagatcatgtttgtc > 1:7807‑M1/1‑102 (MQ=255) gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccAAAATAAAATAAAAAGAAAGGCAACAATCAACTTAATGTTAATGa < 1:87148‑M1/45‑1 (MQ=255) aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcct > 2:168200‑M1/1‑100 (MQ=255) aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat < 1:149411‑M1/143‑44 (MQ=255) aTAACTCCCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCCCATAATCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg < 2:223696‑M1/143‑47 (MQ=255) ataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag > 1:342574‑M1/1‑83 (MQ=255) tcatcTACTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatacgagatcatgtttgcactctggagccatagaacagggtt > 2:61332‑M1/1‑79 (MQ=255) gCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat < 2:82179‑M1/143‑71 (MQ=255) tataAATAGTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga < 2:80750‑M1/143‑73 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt < 1:234348‑M1/77‑1 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAAAAATCAACTTAATGTTAATGAAATGATATACATATATTAACCACTAGTTTAAt < 2:290744‑M1/77‑1 (MQ=255) acatgaagaaatgaaatgactgagtcagccgagaagaatttcaccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTAGTTTAATGCgg < 2:195809‑M1/81‑1 (MQ=255) taatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc < 1:265137‑M1/143‑79 (MQ=255) cctgtggatatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga > 2:327266‑M1/62‑143 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttccCTAATTAAATACAAAGAAAGACAACAATCAACTTAATGTTAATGAAATATTTTACAAACATTAACAACATGattaatacgca < 2:384262‑M1/82‑6 (MQ=255) gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATCAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATAATTTACATATATTAACCACTTGTTTAATGCGGAGAATCa < 1:66946‑M1/88‑1 (MQ=255) tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacacgtccctgatatgcgttcatgtttgtcatctggagccatagaacagggatcatcatgagtcatcaacttac > 1:37471‑M1/1‑58 (MQ=255) aaatgaaatgactgagtcagtcgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAGTCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAatctg < 2:127619‑M1/89‑3 (MQ=255) tGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggattcataataagacatcaactaacattcg > 1:262725‑M1/1‑53 (MQ=255) cAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaagctgcgaacaagacactaatatgagaacatatatgtcatctggaacaataaaacagagttcatcatgagccatcaacttaccttcgcc > 1:149134‑M1/1‑51 (MQ=255) ttaCCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga < 2:88153‑M1/142‑95 (MQ=255) gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcactgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctccgccgacagcga > 2:258306‑M1/1‑43 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTtat > 2:34412‑M1/39‑143 (MQ=255) aTAAGCTATTTTTAAACAGACATTTACCGTTCTATAAACTAAggaaggtgcgaacaagtccctgatatgagatcaggtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa < 1:26961‑M1/143‑102 (MQ=255) aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa < 1:299991‑M1/143‑102 (MQ=255) atgcaatttttAAACAGACGCTTACCGTACAACAAACGAAggaaggtgcgaacaagtctctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt < 2:313455‑M1/138‑104 (MQ=255) agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGTAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATaa > 1:288821‑M1/37‑143 (MQ=255) cTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag < 2:342574‑M1/143‑107 (MQ=255) cTAGTTTTAAACCGACTCTTACCGCACAACGCACTAAtgaaggtgcgaacaagcccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag < 2:353018‑M1/143‑107 (MQ=255) aagaatttccccgcttattcgcaccttccCTAATTAAATACAGAGAAAGGCAACCATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAtt < 1:8183‑M1/114‑1 (MQ=255) cAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc < 2:202715‑M1/143‑118 (MQ=255) cgcttattcgcaccttccCTATTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat < 1:246725‑M1/125‑1 (MQ=255) cgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTGAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat > 1:73314‑M1/19‑143 (MQ=255) gcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGATTTACATATATTAACCAATAAATTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATg < 1:52842‑M1/126‑1 (MQ=255) cgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGATAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCg > 2:359657‑M1/11‑143 (MQ=255) acaacaAACGAAgtaagctgcgaacaagtccctgatatgagatcatgtttgccatctggacccatagaaccgggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagtgccgtcagaccagaaaa < 2:151415‑M1/143‑132 (MQ=255) accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAACACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACCTTTGAAATTATATgatcacaggaa < 2:50896‑M1/136‑6 (MQ=255) ctcgctgaaggatggtgcgaacatgtccgtgatatgagatcatgtctgtaatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag < 2:339853‑M1/136‑135 (MQ=255) aaCGAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccagagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagggccgtcagaccaggaaagggatt > 2:182161‑M1/1‑6 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgcgatcatgtttgtcatctggagccatagaacacggttcatcatgagtcctcaacttaccttcgccgacagtaaattcagaagtaagcgcagaaagactagaaaagagacttt > 1:173520‑M1/1‑4 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctagagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcactaagcgccctcacacccgcaaagagaaatc > 2:353943‑M1/1‑4 (MQ=255) tAAgtaaagtgcgaacaagtccttgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc < 1:245659‑M1/143‑141 (MQ=255) tAAggaaggtgctaataagtccctgatatgagatgatgtttgtgatctggagccatagaacagggttcatcatgaggcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc < 1:271606‑M1/143‑141 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaccgtgaattcagcagtaagcgccgtcataccagaaaagagattttc > 1:143455‑M1/1‑3 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc < 2:323474‑M1/143‑141 (MQ=255) tAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGggattga > 2:148587/1‑143 (MQ=255) gaaggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc < 1:247149‑M1/142‑141 (MQ=255) aaggagggggcgaagaaggccctgttatgagatcatgtttgtcagctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct < 2:339132‑M1/143‑142 (MQ=255) aaggaaggtgcgaacaagtcccttatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct < 1:239595‑M1/143‑142 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt > 2:305493‑M1/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgacgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt > 2:382141‑M1/1‑1 (MQ=255) | AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT > NC_000913/1979347‑1979631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |