Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 19 [0] [0] 20 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)17 (0.860) 15/264 0.3 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

ACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTC  >  NC_000913/3815718‑3815993
                                                                                                                                           |                                                                                                                                        
acCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt                                                                                                                                       >  1:301119‑M1/1‑140 (MQ=255)
                 aaaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCAACTTACTTTTCTACAGACAAAAACAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccccagaacttcaatga                                                                                                                      >  2:5917‑M1/1‑123 (MQ=255)
                              tGGCGCTGTTATGGTTTCATGCTTTCGCTCCTTATCTTACTTTTATACAGACAAAAAAAAGGCGACTCATAAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttc                                                                                                         <  1:225376‑M1/143‑34 (MQ=255)
                               ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                        <  1:190999‑M1/143‑35 (MQ=255)
                                          ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccactgcccttccagcatgcgcccgtcctcgctcatcaccac                                                                                             >  2:55793‑M1/1‑98 (MQ=255)
                                                                tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca                                                                       >  2:144018‑M1/1‑76 (MQ=255)
                                                                 cTTCCTTTTCTACAGTCGAAAAAAAGGCGACTCATCAGTCGCCTTAAATGTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcag                                                                      <  2:245160‑M1/143‑69 (MQ=255)
                                                                      ttttCTACAGACAAAAAAAAGGCGACTCATCCGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtct                                                                 >  1:289564‑M1/1‑70 (MQ=255)
                                                                      ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcagtatgttgctgtcggtctctgcgcgcaagcct                                                                 >  2:198783‑M1/1‑70 (MQ=255)
                                                                          ctccagaCAAAAAACAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                             <  1:34322‑M1/140‑78 (MQ=255)
                                                                                     caaacgGCCACTCCTCCGTCGCCTTAAACATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                  <  2:58121‑M1/142‑89 (MQ=255)
                                                                                     aaaaaTGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCTTGCGCCGCTTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcagcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                  <  1:23177‑M1/143‑89 (MQ=255)
                                                                                     aaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtaccctgcacttaaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtccctgcggcacagtcttcaacgtatcccaga                                                  >  2:16785‑M1/1‑55 (MQ=255)
                                                                                             gACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcactgatgcgcccgtcttcggtcatcactacgttcatgtcggactctacggcagagtcttcaacgtattacagatcaaaaaa                                          >  1:304157‑M1/1‑47 (MQ=255)
                                                                                               cTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccg                                        >  2:74341‑M1/1‑45 (MQ=255)
                                                                                                 catcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgctcgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgct                                      <  1:204161‑M1/143‑101 (MQ=255)
                                                                                                              aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcaatacgttaatatcgatctatgcggcagagtcttcaacgtattccagattgcaaaccgcttcgccgttcacaa                         >  1:88453‑M1/1‑30 (MQ=255)
                                                                                                                                 cccccttcTGCtgtctcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgtcagagtcttcaacttattccagttcgcaaaccgcttcgccgttcacaattccgacagaaactgcggc      <  2:211443‑M1/140‑133 (MQ=255)
                                                                                                                                     cTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctgtgcggcagagtcttcaacgtattccagatcgcaacccgcttcctccctcacaattccgacagaaacagacgctacg  >  2:32153‑M1/1‑7 (MQ=255)
                                                                                                                                           |                                                                                                                                        
ACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTC  >  NC_000913/3815718‑3815993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.