| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 13 [0] | [2] 15 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 11 (0.550) | 11/270 | 0.6 | 91.7% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 2 (0.100) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
CAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCC > NC_000913/3909175‑3909449 | cAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTGCCGTATTGGGCGGCGGCGTCATTCCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGCGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaag > 2:115479‑M1/1‑136 (MQ=255) caagtgcgttcGCCCCACCACCACCTTCCTTATTGGTCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaaca < 2:68055‑M1/138‑22 (MQ=255) cTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATAAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccggga > 1:223257‑M1/1‑98 (MQ=255) aTTTGGCTGCGGCGTCATTTCTGTGAATTTCTTTTGCGACATAGCTTCGATACCGCGAGAGATGGTGGACATTAAAAGCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgat < 1:259294‑M1/143‑53 (MQ=255) gcggcggcgTCATTTCAGTGAACAGCGCCAGCGACATTCCGTCTATACCGCGAGTGATTGTGGACATTAAAGGCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagca < 1:181820‑M1/143‑58 (MQ=255) gcgTCGTTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGGTGGTGGACATTAAAATCCCGATCAGCCAGgcgcaagctcagtcaggtacagggcgatcccgaaactcaccgggacggcgatcagcagcgcga < 1:106724‑M1/143‑64 (MQ=255) cgcCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggcacaggccgataccgaaactcaacgggacagcgatcaacagcgcgataaaagaagtaacaaacaa > 1:165598‑M1/1‑61 (MQ=255) aCCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGCTCAGCCAGgcgcacgctcagtcaggaacagggcgataccgaaactcaccgaaacggcaatcagcagcgcgataaacgaagtcaacaacgtaccgtagatcgg > 1:36128‑M1/1‑49 (MQ=255) ccGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggccaacaccaacacgataaacaaagaaaccaaagtaacgtaaatcggc > 1:81225‑M1/1‑48 (MQ=255) ccGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccgcaggatcgtagatcggcaccagcgcc < 2:227981‑M1/143‑105 (MQ=255) gATGGTCGACATTAATATTCATATCAGCTAGtctcaatctcattcttgaacagggcgataccgaaactaaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagat < 1:44341‑M1/143‑113 (MQ=255) gcaGCCAGgcgcgagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctt < 1:385806‑M1/142‑136 (MQ=255) ccAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgcagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatagatcggtacatcacaccctttggt > 1:211945‑M1/1‑4 (MQ=255) | CAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCC > NC_000913/3909175‑3909449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |