Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 22 [0] [0] 22 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)21 (1.050) 18/268 0.1 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCAT  >  NC_000913/1979138‑1979414
                                                                                                                                             |                                                                                                                                       
ggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgta                                                                                                                                        >  2:299991‑M2/142‑143 (MQ=255)
      tacacttatctaagatttttcctaaatcgacgcacctgtactcgtcactacacgcacatacaacggaggggtgctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                                                                  <  2:29643‑M2/8‑1 (MQ=255)
          cttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaaccgaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAATTAATAc                                                                                                                              >  2:302422‑M2/132‑143 (MQ=255)
                taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttccataatgcgtgatgcagaccactcaacacactcaattacttaccataattaTATCATTCATgctttttc                                                                                                                        >  1:159027‑M2/126‑141 (MQ=255)
                taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCatacttaggt                                                                                                                        >  2:120917‑M2/126‑139 (MQ=255)
                          cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggagggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAATCATACTTCTGTGTTAGGTGTa                                                                                                              >  2:26961‑M2/116‑143 (MQ=255)
                            taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgttgttgtttggcccaaacacacaattacttaacataaatgTATAAGTCATAATTTTAATTTGGGTGTAtt                                                                                                            >  1:82179‑M2/114‑143 (MQ=255)
                                   acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttgacataaatgTATGTGTCATACTTTTGATATGAGTGTATTTCAATCt                                                                                                     >  1:80750‑M2/107‑143 (MQ=255)
                                            tactcgtcactacacgcacatacaacggagtgggtttgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                            <  1:61058‑M2/46‑1 (MQ=255)
                                                           gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGCCATACTTTTGCTTTGGGTGTATTTCAATCCGTTAAAACGTTGTtcgcaacgctc                                                                             >  2:345840‑M2/83‑142 (MQ=255)
                                                                     cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatcaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTATTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                   >  1:381413‑M2/73‑143 (MQ=255)
                                                                     cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATAGCAAACaaaa                                                                   >  1:313455‑M2/73‑143 (MQ=255)
                                                                          gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                                                              <  1:120205‑M2/76‑1 (MQ=255)
                                                                                  cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCCAAAATGAAACAGGaat                                                      >  2:231127‑M2/60‑143 (MQ=255)
                                                                                  cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat                                                      >  1:353018‑M2/60‑143 (MQ=255)
                                                                                            taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATATTTTTGTTTTGTGTGTATTTCAATGTGTTAAAAAGTTGTTCGCGACGCGAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                            <  1:5602‑M2/94‑1 (MQ=255)
                                                                                                   tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTGTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCCAGCACGCAACAAGGAAACAGGAATAATCGACATGAGATGtt                                     >  1:248356‑M2/43‑143 (MQ=255)
                                                                                                               cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATCTGTTAAAAAATATTTAGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaa                         >  1:69723‑M2/31‑143 (MQ=255)
                                                                                                                 caaaacactcaattacttaacataactgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCCAGCAAAACTGAAACAGGAATAATCGAAACGGGCTGTTGCGCCccgtcctca                       >  1:45602‑M2/29‑139 (MQ=255)
                                                                                                                  aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                      >  1:202715‑M2/28‑143 (MQ=255)
                                                                                                                                  gtacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa      <  2:298667‑M2/132‑1 (MQ=255)
                                                                                                                                      ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCCATCTGTTAAAAAGTTTTTCGCAACGCTAGCAAGCAAAAATAAAACAGGAATAATCAAAATGAGATGTTACACACAGTCAAAATAACTCACCGTAAATAatcat  >  1:25347‑M2/8‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                       
TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCAT  >  NC_000913/1979138‑1979414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.