New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	0 (0.000)	32 (1.510)	23/284	0.0	100%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					intergenic (‑5/+146)	wbbL/insH1	pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator

AGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGC  >  NC_000913/2101614‑2101870                                                                                                                                        |                                                                                                                          aGTACATAAAGTAACCTTGATCGAAGCCATATACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATCCTTTCTTTAGGAATATTTGTCATACTaaggaaggag                                                                                                                    >  2:369700/1‑141 (MQ=255)        aaaGTAACCTTGATCGAAGCCATTTACACGCACAAACTCTGAAAAACGTACCAGCATAAATGATCCTGCACACAAATCAACAACCGTATCAGAATAGATACTTTCATTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATaa                                                                                                             >  1:10649/1‑143 (MQ=255)                 ttGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGAAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                    >  1:94149/1‑143 (MQ=255)                  tGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCATTCAACAACAGTATAAGAATAGATACTTTCTATAGGAATTTTTGTTTTATTAAGGAAGGTGAGAATAAGCGGGGAAAt                                                                                                   >  1:161561/1‑143 (MQ=255)                                     gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTCAGGCCGCAGAGTGGAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                >  2:265751/1‑143 (MQ=255)                                       acaAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCATCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtca                                                                              <  1:272360/143‑1 (MQ=255)                                        caAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTCAGGAAGGTGCGAATAAGCGGGAAAATTCTTATCGACTGACTCAGttat                                                                             >  1:156954/1‑143 (MQ=39)                                          aaaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCCTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGACATTCTTCTCGGCTGACTCAGtcattt                                                                           >  2:102219/1‑143 (MQ=255)                                                                tAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                                                     >  2:94651/1‑143 (MQ=255)                                                                            cgcACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGCACGTGTCAATCAGCGGGGAAATTATTATCGCATGACTAAGTAAATTCATTTATTCACGTTTAAGCCGAtttttttgcacg                                         >  1:273221/1‑137 (MQ=255)                                                                                   aTCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGACATTCTTCTCGGCTGACTCAGTAATTTCATTTCTTCATGATTCAGCAGATTTTTTCTACCGTAATTGc                                  >  2:156151/1‑143 (MQ=21)                                                                                         aacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                            <  2:125839/143‑1 (MQ=255)                                                                                              tATCATTATAGATACTTTCTTTAGGAATTTTTGTGTTATAAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                       <  1:39575/143‑1 (MQ=255)                                                                                              tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                       <  1:94651/143‑1 (MQ=255)                                                                                                   gattAGATTCTTTCTTTAGGAATGTTTGTTTTTGTAAGGAAGGTGTGAATAAGCGGGGAAATTCTTCTAAGCTGTTTCTGTCTTTTGATGTCGTCATGTTTGAGCCGATTTTGTCTCCCGTAAATGTCTTGAATCAGCCTAtt                  <  2:162290/140‑1 (MQ=14)                                                                                                             tttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGACGATTTTTTCTCCCGTAAATGACTTGAATCAGCCTATTTAGACCGtgt        >  1:220395/1‑141 (MQ=255)                                                                                                                   tAGGAATTTTTGTTTTATTAAGTAAGGTGCGAATAATCTTTGAAATTCTTCTCGTCTGACTCAGTCATTTCATTTCTTCATGTTAGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc  <  1:17014/143‑1 (MQ=14)                                                                                                                                        |                                                                                                                          AGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGC  >  NC_000913/2101614‑2101870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.