Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 417,368 Δ5 bp coding (227‑231/690 nt) phoB → response regulator in two‑component regulatory system with PhoR

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 417368 417372 5 41 [0] [0] 41 phoB response regulator in two‑component regulatory system with PhoR

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4173670 (0.000)41 (0.970) 36/284 0.2 100% coding (226/690 nt) phoB response regulator in two‑component regulatory system with PhoR
?NC_000913 417373 = 0 (0.000)coding (232/690 nt) phoB response regulator in two‑component regulatory system with PhoR

CGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCG  >  NC_000913/417227‑417506
                                                                                                                                             |                                                                                                                                           
cGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGCTGTTCCCTCGCGCCACCGGTATCCAGTTCACCAAACACCTCAAGCGCGACTCCGTGACCCGGGcc                                                                                                                                           >  1:256208‑M1/1‑141 (MQ=255)
   tCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCCGTTCATCAAACACCTCAAGCGCGAGTCGAAGACCCGGGcccgg                                                                                                                                        >  1:347359‑M1/1‑138 (MQ=255)
      aaGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggt                                                                                                                                     <  1:48850‑M1/143‑9 (MQ=255)
         cGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGCTGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgat                                                                                                                                  <  2:660960‑M1/143‑12 (MQ=255)
           gAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTACTTCTCCTCGACTGGATGTTACCGGGCGGCTCCGGTATCCAGTTCATCAGACACCTCAAGCGCGAGTCGATGCCCCGAGccagtgatgcagc                                                                                                                                >  1:147189‑M1/1‑130 (MQ=255)
           gAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgctgt                                                                                                                                >  2:482897‑M1/1‑130 (MQ=255)
           gAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgt                                                                                                                                <  2:439975‑M1/143‑14 (MQ=255)
            aaGATCATGACAGTGCTGCGAATCAACTGAAGGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTACCCAGTTCATCAATCACCGCAAGCGCGAGTCGATGACCCGGGccagtggtgatgtt                                                                                                                               <  2:139640‑M1/143‑15 (MQ=255)
             aGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccggtggtgatgttg                                                                                                                              >  2:38726‑M1/1‑128 (MQ=255)
                    gACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgcca                                                                                                                       <  2:418978‑M1/143‑23 (MQ=255)
                         tGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggg                                                                                                                  <  1:560634‑M1/143‑28 (MQ=255)
                           cTGTGAATCAACTGAATGACCCCTGGCCTTATTTAATCCCCCTCGACTGGAGGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagagggga                                                                                                                <  2:456338‑M1/143‑30 (MQ=255)
                             gtgAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGAGGACCCGGGccagtggtgatgttgacggccagaggggaag                                                                                                              >  2:481609‑M1/1‑112 (MQ=255)
                                    aaCTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTGTCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGCCCCGGGcaggacgtggtgtggacggcccgggggggcgaagaaga                                                                                                       >  2:567415‑M1/1‑105 (MQ=255)
                                      gtgggtgagccctgGCCGGATTGAGTTCTCCTCGAGGGGATGTTACCTGGCGGCGCCGGTATCCAGGTCATCAAACGCCTCAAGCGCGAGTCGAGGAGCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatc                                                                                                     <  1:196999‑M1/138‑41 (MQ=255)
                                         aaggggccctggccgGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcg                                                                                                  <  2:317967‑M1/137‑44 (MQ=255)
                                            gtaccCTGGCCGGGTTTAACTCTCCTCGACTGGTGTTGACGTGGAGTCTCGGGTATCCAGTTCATCAACCACCTCCAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgc                                                                                               <  1:631095‑M1/141‑47 (MQ=255)
                                                ccTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgtggcccgccagaggggaagaagacgagcgcgtgcgcgg                                                                                           >  2:69205‑M1/1‑93 (MQ=255)
                                                 cTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagaggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggc                                                                                          >  1:525619‑M1/1‑92 (MQ=255)
                                                  tGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggcgatgttgacggccagaggggaagcagacgaccgcgggcgcggcc                                                                                         >  1:407958‑M1/1‑91 (MQ=255)
                                                          tttAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaacc                                                                                 >  2:491310‑M1/1‑83 (MQ=255)
                                                                     tcGCCTGGACGTGACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatga                                                                      <  1:175245‑M1/143‑72 (MQ=255)
                                                                     tcGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatga                                                                      >  1:197346‑M1/1‑72 (MQ=255)
                                                                     tcGACTGGATGGTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatga                                                                      >  2:619304‑M1/1‑72 (MQ=255)
                                                                        aCTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgacta                                                                   <  1:561015‑M1/143‑75 (MQ=255)
                                                                               gTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgagtagggcgacttgaaaccggcgcggatgactatatcacc                                                            >  2:689704‑M1/1‑62 (MQ=255)
                                                                                 tACCTGGCGGCTCCGGTATCCATTTCATCAAACTCCTCAAACGCGAGTCGATGACCCGGGccagtgttgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaa                                                          <  2:136649‑M1/143‑84 (MQ=255)
                                                                                            cTCCGGGATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcg                                                <  1:660019‑M1/143‑94 (MQ=255)
                                                                                               cGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccg                                             >  1:666419‑M1/1‑47 (MQ=255)
                                                                                                 gTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaa                                           <  2:494174‑M1/143‑99 (MQ=255)
                                                                                                        gTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgtgtgcgccgaaggagcgg                                    >  2:725120‑M1/1‑38 (MQ=255)
                                                                                                         ttCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtaatgttgaccgacaggcgggcagaagaagatcgcgtgcgcggacttgaaagcggcgcggatgactacagcaccaagccgttgtcgccgagaccgctgg                                   >  1:676418‑M1/1‑37 (MQ=255)
                                                                                                                aaCACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgacggagctggtggcgcg                            >  2:668282‑M1/1‑30 (MQ=255)
                                                                                                                       ccagcGCGAGACGGTGACCCCGGccagggttgacgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaa                     <  2:165507‑M1/141‑121 (MQ=255)
                                                                                                                       caggcgcgggCCGAGGACCCGGGccagtggggatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaa                     <  2:256208‑M1/140‑121 (MQ=255)
                                                                                                                       cAAGCGCGAGTAGAGGACCCTGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaa                     <  1:605175‑M1/143‑121 (MQ=255)
                                                                                                                         aGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatccaagc                   >  2:93003‑M1/1‑21 (MQ=255)
                                                                                                                         aGCGCGAGTCGATGACCCGGGccagtggtgatgtagaccgccagaggggaagaagaagatcgagtgggcggccttgaaaacggcgcggaggacgatatcaccaagccgttttagccgaaggggctggtggcgggaatcaaagc                   >  1:33027‑M1/1‑21 (MQ=255)
                                                                                                                                   gATGCCCCGGGccagtggtgatgttggccgccaggggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaagcggtaatgcgc         <  1:156149‑M1/143‑133 (MQ=255)
                                                                                                                                         ccGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaagcggtaatgcgcagtagt   >  1:625871‑M1/1‑5 (MQ=255)
                                                                                                                                          cGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaagcggtaatgcgccggattt  >  2:587796‑M1/1‑4 (MQ=255)
                                                                                                                                             |                                                                                                                                           
CGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCG  >  NC_000913/417227‑417506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.