New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 17557582 (0.050)29 (0.690) 23/284 0.9 93.5% coding (61/1413 nt) pykF pyruvate kinase I
?NC_000913 = 2102943 NA (NA)intergenic (‑32/+1) insH1/wbbL IS5 transposase and trans‑activator/pseudogene, lipopolysaccharide biosynthesis protein

GTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAA  >  NC_000913/1755617‑1755900
                                                                                                                                             |                                                                                                                                              
gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGc                                                                                                                                               >  2:697068‑M2/139‑143 (MQ=255)
    tACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACAAAGACTGTCATGAAAAAGACCAAAATTGTGTGCACCAGCGGACCGAAGAGCGAATCGGCAGAGAGGTGAGggaag                                                                                                                                           >  1:274337‑M1/1‑138 (MQ=255)
      gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAAt                                                                                                                                         >  2:445287‑M2/133‑143 (MQ=255)
           ttCGCTTGCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaa                                                                                                                                    <  2:560731‑M1/143‑13 (MQ=255)
             cGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaaca                                                                                                                                  <  1:229213‑M1/143‑15 (MQ=255)
                gcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACTAAAATCCTGGACGCt                                                                                                                               >  1:114367‑M2/123‑143 (MQ=255)
                 cgaagaaaagctctaaataggctgattgaaggcatctacgggagaaaaaagcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattcccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTg                                                                                                                              <  1:23554‑M2/22‑1 (MQ=255)
                   aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGc                                                                                                                            <  2:236220‑M2/24‑1 (MQ=255)
                     gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCAt                                                                                                                          >  2:603864‑M2/118‑143 (MQ=255)
                                   aaaGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                            <  1:128111‑M1/143‑37 (MQ=255)
                                    ggctaattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCt                                                                                                           <  1:20855‑M2/41‑1 (MQ=255)
                                     gctgattcaaggcatttacgggagaaaaaatcggctcaaccatgaacaaatgaaatgactgagtcagccgacaagaatttccccgcttattcgcaccttacTTAGCTAACACGCTGGCCGCTGGTAGCAACGtgatgccggtt                                                                                                          >  1:726053‑M2/102‑138 (MQ=255)
                                     gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTg                                                                                                          >  1:215747‑M2/102‑143 (MQ=255)
                                     gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgaacactccTTAGCTAAAATGCTCGACGCTGGCATGAACGTTATGCGTCTg                                                                                                          >  1:322913‑M2/102‑143 (MQ=255)
                                     gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagacagcccaggagaatttccccgcttattcgcaccttccTCAGCTAAAATGCTGTCCCCTGgcacggacgttccgcctcta                                                                                                          >  1:507778‑M2/102‑134 (MQ=255)
                                     gcggagtcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatgtcccggcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTg                                                                                                          <  2:275496‑M2/42‑1 (MQ=255)
                                      ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTCGACGCTGGCATGAACGTCATGCGTCTGa                                                                                                         >  1:651849‑M2/101‑143 (MQ=255)
                                          ttcaacgcatttacgcgagaacaactcggctcaaacatgaagaaacgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCGGGCATGAACGTTATGCGTCTGAACtt                                                                                                     <  2:221272‑M2/47‑1 (MQ=255)
                                              aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTtctct                                                                                                 >  2:17038‑M2/93‑143 (MQ=255)
                                                   tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATgg                                                                                            <  1:361384‑M2/56‑1 (MQ=255)
                                                   aTCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCGGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                                                                            >  1:712396‑M1/1‑91 (MQ=255)
                                                        gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACt                                                                                       <  1:405034‑M2/61‑1 (MQ=255)
                                                         ggagaaaaaatcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTa                                                                                      <  2:143916‑M2/62‑1 (MQ=255)
                                                          gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTACCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTAt                                                                                     >  2:431477‑M2/81‑143 (MQ=255)
                                                            gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGc                                                                                   >  2:598573‑M2/79‑143 (MQ=255)
                                                            gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTGAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGc                                                                                   <  1:74219‑M2/65‑1 (MQ=255)
                                                            aaCTTAAAGACTAAGCCTGTCATGACAAGGATAATAATTAGCTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                   >  1:717939‑M1/1‑82 (MQ=255)
                                                            aaCTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                   >  2:487932‑M1/1‑82 (MQ=255)
                                                             aCTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                  <  1:388682‑M1/143‑63 (MQ=255)
                                                             aCTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggcgcgcacaagtccctgatatgagatcatgcttgtcatcgggagccatagaacaggg                                                                                  >  1:652323‑M1/1‑81 (MQ=255)
                                                                     actaagactGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGACAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagcacagggttcatcgt                                                                          >  2:318297‑M1/1‑73 (MQ=255)
                                                                      gcgcaaacatgaaggaatgaaattactgagccagccgagaagaatttccccgcttattcgcaccttccTTAGCTTAATTGCTGTACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGt                                                                         <  1:122068‑M2/75‑1 (MQ=255)
                                                                       taagactGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttactcttgt                                                                        <  2:538771‑M1/143‑73 (MQ=255)
                                                                        tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAAcacgggcc                                                                       >  1:639059‑M2/67‑140 (MQ=255)
                                                                          aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTGGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCGGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAgc                                                                     >  2:364483‑M2/65‑143 (MQ=255)
                                                                           actGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                                                                    <  2:528056‑M1/143‑77 (MQ=255)
                                                                                      aaaGACCAAAAGTGTTTGCACCATCGGACCGAAAACCGAATCGGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggtgccatagaacagggttcatcatgagtcatcaacttacct                                                         <  2:311338‑M1/143‑88 (MQ=255)
                                                                                       tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCt                                                        <  2:178467‑M2/92‑1 (MQ=255)
                                                                                         agagggctgtgtcagccgagaagaattttcccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTgc                                                      <  1:565578‑M2/94‑1 (MQ=255)
                                                                                         aaatgagtgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGAATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGCATCTgc                                                      <  2:259883‑M2/94‑1 (MQ=255)
                                                                                              actgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTTGCATGAACGTTATGCGTCTGAACTTCTCTGATGGTGACTATGCAGAACACGGGGAGCGCGTTCAACATCTGCgcaga                                                 >  2:82088‑M2/45‑141 (MQ=255)
                                                                                                    tttGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa                                           >  2:687789‑M1/1‑42 (MQ=255)
                                                                                                      tGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgtgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                         >  2:31996‑M1/1‑40 (MQ=255)
                                                                                                           cATCGGACCGATAACCGAATCTGATGTGATGTTCGgggaggtggcaacaggtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                    <  2:608357‑M1/143‑109 (MQ=255)
                                                                                                           cATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                    <  2:712396‑M1/143‑109 (MQ=255)
                                                                                                            aTCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcag                                   >  2:621103‑M1/1‑34 (MQ=255)
                                                                                                             aagaatttctgcgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGGCTGAACTTCTCTCATGGTGGCTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACt                                  <  1:57860‑M2/114‑1 (MQ=255)
                                                                                                               ggACCGAAATCCGAATATGAGGAGATGTTAGggagggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcaccgacagtgaattcagcagtaa                                <  1:214662‑M1/143‑113 (MQ=255)
                                                                                                               gaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCTCATTCAGAATCTGCGCAACGTGATGAGCCAAACTgg                                >  1:288781‑M2/28‑143 (MQ=255)
                                                                                                                gACCGAAAACCGAATCTGAAGAGATGTTAGggaacgtgcgaacaagtccctgatataagatcatattagtcatatggagccatagaacagggatcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag                               >  2:44021‑M1/1‑30 (MQ=255)
                                                                                                                catttccccgcttattcgcaccttccTTAGCTAAAATTCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGt                               <  1:98941‑M2/117‑1 (MQ=255)
                                                                                                                aatttccccccttattcgcatctttcTTAGCTATAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATTGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGt                               <  1:405271‑M2/117‑1 (MQ=255)
                                                                                                                 agatccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGACCGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGAGATCAGAAAAActggga                              >  1:159954‑M2/26‑141 (MQ=255)
                                                                                                                   cGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagcaagcgc                            >  1:338460‑M1/1‑27 (MQ=255)
                                                                                                                   cGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtcaattcagcagtcagcgc                            >  2:585678‑M1/1‑27 (MQ=255)
                                                                                                                   cGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacattcgccgacagtgaattcagcagtacgccc                            >  1:242084‑M1/1‑27 (MQ=255)
                                                                                                                     ccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCCACGGGAGGACCAAAACTAGAAAAAc                          >  1:35260‑M2/22‑143 (MQ=255)
                                                                                                                       ccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAAccg                        >  1:450947‑M2/20‑143 (MQ=255)
                                                                                                                         gcgtattcgcacctcccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAAccgcc                      <  1:587810‑M2/126‑1 (MQ=255)
                                                                                                                               tcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATc                >  2:498195‑M2/12‑143 (MQ=255)
                                                                                                                                cgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAGCGTGATGAGCAAAACTGGTAAAACCGCCGCTAAcc               >  1:240602‑M2/11‑143 (MQ=255)
                                                                                                                                 gAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaactcagcagtaagcgccgtcagaccagcaa              >  1:255826‑M1/1‑13 (MQ=255)
                                                                                                                                 gAAGAGATGTGAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa              <  2:353898‑M1/143‑131 (MQ=255)
                                                                                                                                  caccttccTTAGCTAAAATGCTGGACGTTTGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTg             <  1:334469‑M2/135‑1 (MQ=255)
                                                                                                                                  caccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCAATCCTg             >  1:650549‑M2/9‑143 (MQ=255)
                                                                                                                                  agtgtcgccgagggagggtgcgaacaagtccctgttatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa             <  1:531781‑M1/133‑132 (MQ=255)
                                                                                                                                  aaGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagagaa             >  1:59134‑M1/1‑12 (MQ=255)
                                                                                                                                   accttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGc            <  1:17038‑M2/136‑1 (MQ=255)
                                                                                                                                          ttAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagagaattcagcagtaagcgccgtcagaccagaaaagagatcat     >  1:566162‑M1/1‑4 (MQ=255)
                                                                                                                                           tAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaagtcagcagtaagcgccgtcagaccagaaaagaggttttc    >  2:9132‑M1/1‑3 (MQ=255)
                                                                                                                                           tAGCTAAAATGCTGTATGCTGTCATGAACGTTATGCGTTTGAACTTCTCTCATGTTGACTATGCAGAACACGTTCAGCGTATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATAcc    <  1:697068/143‑1 (MQ=255)
                                                                                                                                             gCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCaa  <  1:598573/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
GTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAA  >  NC_000913/1755617‑1755900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.