New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258674NA (NA)39 (0.930) 35/282 0.2 100% intergenic (+775/‑2) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 1303173 = 0 (0.000)coding (275/921 nt) oppB oligopeptide ABC transporter permease

GTGATGGCCAATATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTT  >  NC_000913/1303031‑1303315
                                                                                                                                              |                                                                                                                                              
agcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc                                                                                                                                                <  1:200973‑M2/1‑1 (MQ=255)
        tgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagaaagttgacagcagcacCCAGTTTTc                                                                                                                                        >  1:4202‑M2/135‑143 (MQ=255)
         gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTcc                                                                                                                                       <  1:221149‑M2/10‑1 (MQ=255)
            cggcggtgcgtgtgccgctacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGt                                                                                                                                    <  2:120279‑M2/13‑1 (MQ=255)
                ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagcaagttggcagcatcccCCAGTTTTCCCGTTTCt                                                                                                                                >  1:521871‑M2/127‑143 (MQ=255)
                  tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGc                                                                                                                              <  2:326410‑M2/19‑1 (MQ=255)
                          ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTgg                                                                                                                      <  1:5181‑M2/27‑1 (MQ=255)
                                 gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcccCCAGTTTTCCCGTCTCTGCCACACTGGGAGCCgc                                                                                                               >  2:629006‑M2/110‑143 (MQ=255)
                                    ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCgcagc                                                                                                            <  2:672714‑M2/37‑1 (MQ=255)
                                          cgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCAttttt                                                                                                      <  2:394374‑M2/43‑1 (MQ=255)
                                                tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAGACTGGGAGCCGCAGCATTTTTCGTTGc                                                                                                >  2:1381‑M2/95‑143 (MQ=255)
                                                cagcggaacacgagggacagctgatagacacagaagccactggagcacctcaaaaacaccatcatacaccaaaccagtaagttggcagcatcacCCAGTGTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGc                                                                                                <  2:356999‑M2/49‑1 (MQ=255)
                                                 agctgaacaggagggccagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCg                                                                                               <  2:278807‑M2/50‑1 (MQ=255)
                                                  gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCCAACTGGAAGCCGCAGCATTTTTCCCTGCgg                                                                                              >  2:120030‑M2/93‑143 (MQ=255)
                                                       acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATa                                                                                         <  2:160505‑M2/56‑1 (MQ=255)
                                                         aggaggcacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACt                                                                                       <  2:654017‑M2/58‑1 (MQ=255)
                                                                acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGtt                                                                                <  2:587869‑M2/65‑1 (MQ=255)
                                                                      gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTaatactgggtgcacgtgct                                                                          >  1:667833‑M2/73‑135 (MQ=255)
                                                                           aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCGTTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGt                                                                     >  2:29751‑M2/68‑143 (MQ=255)
                                                                           aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTCGTGCTGGCGt                                                                     >  2:227191‑M2/68‑143 (MQ=255)
                                                                                 aactcactggagcccgtcaaaaacaccatcttaccctacatcagtaagttggcagcatcgcCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGc                                                               <  1:97496‑M2/82‑1 (MQ=255)
                                                                                     cactggagcgccgcaaaaacaccagcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTGTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCa                                                           <  2:591408‑M2/86‑1 (MQ=255)
                                                                                                ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTaaaacaaaa                                                <  2:315633‑M2/97‑1 (MQ=255)
                                                                                                  caaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGACGCAGCATTTTTCCTTGCGGTAATACTGGGTGATAGTGCTGGCGTTATTGCCGCACTAaaccaaaaca                                              >  1:68104‑M2/45‑143 (MQ=255)
                                                                                                    acatgacgcgcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTGGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACAcc                                            <  1:381061‑M2/101‑1 (MQ=255)
                                                                                                    aaaacaccctcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTGGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACAcc                                            <  2:141429‑M2/101‑1 (MQ=255)
                                                                                                     aaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCa                                           >  2:268153‑M2/42‑143 (MQ=255)
                                                                                                       acaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCAGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCaaa                                         >  1:711662‑M2/40‑143 (MQ=255)
                                                                                                        caccatcatacacgacaccagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAAt                                        <  2:59850‑M2/105‑1 (MQ=255)
                                                                                                           catcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAAATGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAAAAAAACACTAAAAggg                                     >  2:104749‑M2/36‑143 (MQ=255)
                                                                                                             tcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAGACAAAACACCGactggacc                                   >  1:396621‑M2/34‑140 (MQ=255)
                                                                                                                    ctaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCCGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCg                            >  1:126097‑M2/27‑143 (MQ=255)
                                                                                                                              aagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGGCTATACCGTGATGGGGCt                  >  2:44262‑M2/17‑143 (MQ=255)
                                                                                                                              aaggtggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACAGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTAGTGCCGCATTAAGACAAAACACCAAATGGGACTATACCGTGATGGGGCt                  <  1:187950‑M2/127‑1 (MQ=255)
                                                                                                                               agttggccgtctcacCCAGCTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATGTTTCCTTGCGGTAATACTGGTTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTg                 <  1:539731‑M2/128‑1 (MQ=255)
                                                                                                                               agttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACCCCAAATGGGACTATACCGTGATGGGGCTg                 >  1:272353‑M2/16‑143 (MQ=255)
                                                                                                                                      agcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGa          >  2:119788‑M2/9‑143 (MQ=255)
                                                                                                                                         atcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCg       <  2:624423‑M2/138‑1 (MQ=255)
                                                                                                                                         atcacCCAGTTTCCCCGGTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCg       <  2:186999‑M2/138‑1 (MQ=255)
                                                                                                                                           cacCCCGTTTGCCCGTTGCGGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCggg     <  2:131657‑M2/140‑1 (MQ=255)
                                                                                                                                              CCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGtt  <  1:268153‑M2/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
GTGATGGCCAATATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTT  >  NC_000913/1303031‑1303315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.