New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1715908 =	48 (1.140)	3 (0.080)	3/262	6.1	6.0%	intergenic (‑19/+40)	pdxY/tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
	?	NC_000913	1715934 =	49 (1.260)					intergenic (‑45/+14)	pdxY/tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATGGTGATGGC  >  NC_000913/1715800‑1716076                                                                                                                                       |                                                                                                                                               gcCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTa                                                                                                                                        >  2:660524/1‑143 (MQ=255)     aGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCACCTTTCCACTTAATGc                                                                                                                                    >  2:725255/1‑143 (MQ=255)          gcgcATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCattac                                                                                                                               >  1:499206/1‑142 (MQ=255)            gcATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTAACTCCCCCTTTCCACTTAAATCATTAttt                                                                                                                             >  1:251955/1‑143 (MQ=255)             cATGGGAACCTCTGCCGCGCGGGTACCCGCATGTGCATGAACAACGTGAGACTGGATAGCGAGGATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTc                                                                                                                            <  1:517059/143‑1 (MQ=255)                cGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAg                                                                                                                         <  1:26980/143‑1 (MQ=255)                cGGAAACGCTGCCGCACTGTTGCCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAg                                                                                                                         <  2:411586/143‑1 (MQ=255)                 ggAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGc                                                                                                                        >  2:680487/1‑143 (MQ=255)                    agctctGCCGCACTGTTACCCGCATGACCATAAACGACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCaaa                                                                                                                     <  1:385728/141‑1 (MQ=255)                    aagtctGCCGCAGTGTTACCCGCATGACCATAAACATCGGGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACGCCCCCTTTCCACTTAATGCATTATTTCCAGCaaa                                                                                                                     <  1:381288/140‑1 (MQ=255)                       tctGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAACACCAGGGGGAGTAATTTCTCACTCCCCCTTCCCACATAATGCATCATTTCCAGCAAATCa                                                                                                                  >  1:535521/1‑143 (MQ=255)                              cACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTa                                                                                                           <  2:425848/143‑1 (MQ=255)                                      cccGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCtttt                                                                                                   <  2:408031/143‑1 (MQ=255)                                      accccATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTGCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCtttt                                                                                                   <  2:20108/139‑1 (MQ=255)                                           aTGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTACCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTCTACcg                                                                                              <  2:47743/143‑1 (MQ=255)                                                cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATGATGTTCCCTGTATAAAAACCAGGGGGAGTGAGTTCTCACTCCCCCTTTCCGCTTAATGCATTATTTCCGGCAAATCAGACAGTACTTCTTTTTAACGCGaag                                                                                         >  2:68182/1‑141 (MQ=255)                                                cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACg                                                                                         <  1:339746/143‑1 (MQ=255)                                                cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACg                                                                                         <  2:483206/143‑1 (MQ=255)                                                  tataccaagTGATACTGGAGATCGACAATATTTTTAATCCTGTTCCTTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCTCCTTTCCACTTGAATCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCa                                                                                       <  1:724776/135‑1 (MQ=255)                                                      caacGGGAGACTGTATAGCCGGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTaa                                                                                   <  1:316094/143‑1 (MQ=255)                                                           tGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTCAATGCATTATTTCAAGCCACTCAGCCAGTAACTCTTTTTACCGCGACGCAGTAAGGTaa                                                                              >  1:321375/1‑143 (MQ=255)                                                               aCTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCGGCAAATCAGACAGTACTTCTTTTTACCGCGACGAAGTACGTTAAAACg                                                                          >  2:5486/1‑143 (MQ=255)                                                                 atgATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGAc                                                                        <  2:366426/141‑1 (MQ=255)                                                                     tAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGCGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCaaa                                                                    <  1:83213/143‑1 (MQ=255)                                                                        cGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGCCCAAACAg                                                                 >  2:13261/1‑143 (MQ=255)                                                                         gagaATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGa                                                                >  2:659213/1‑143 (MQ=255)                                                                          ttcatatTTTTCATCATGTTCCCTGTATAATCATCAGTGGGAGTGATTTCTCACTCCTCCTTTCCACTTAATGCTTTATTTCCAGCAAATTATACAGTAATTCTTTTTACCTCTACGTAGTAAGGTAAAACGACCAAACAGAc                                                               <  1:73481/140‑1 (MQ=255)                                                                           gaATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACg                                                              <  2:14474/143‑1 (MQ=255)                                                                            aaTATTTTTCATCACGTTCCCTGTATAAAAGCCAGGGGGAGTGATTTCTCGCTCCCCCTTTCCACTTAATGCATGACTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGa                                                             <  2:700303/143‑1 (MQ=255)                                                                              tatTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGCCGGTAATTCTTTTTACCGCGACGCCGTAAGATAAAACGACCAACCCGACGAtc                                                           >  1:74971/1‑143 (MQ=255)                                                                              tatGTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGAtc                                                           <  1:192201/143‑1 (MQ=255)                                                                                      atcatGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTCCCGCGACGCGCTAAGGAAACACGACCAAACAGACGGccttctacta                                                   >  1:477112/1‑142 (MQ=255)                                                                                      atcatGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATcttcttctt                                                   <  2:212249/143‑1 (MQ=255)                                                                                      atcatGTTCCCTGTAGAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATcttcttctt                                                   >  1:617274/1‑143 (MQ=255)                                                                                             tCCCTGTATAAAAACAAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATGTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAaagaa                                            <  1:483135/143‑1 (MQ=255)                                                                                                 tGTATAACAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTAt                                        <  1:201482/143‑1 (MQ=255)                                                                                                    ataAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCa                                     >  2:682836/1‑143 (MQ=255)                                                                                                    ataAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCa                                     <  2:14832/143‑1 (MQ=255)                                                                                                      aaaaaCCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCACATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAgg                                   >  1:440881/1‑143 (MQ=255)                                                                                                      aaaaaCCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAgg                                   >  2:3904/1‑143 (MQ=255)                                                                                                            cAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGa                             <  2:511624/143‑1 (MQ=255)                                                                                                               ggggAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACTGCGTCGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTg                          >  1:225909/1‑143 (MQ=255)                                                                                                                  taGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGttt                       <  2:122735/142‑1 (MQ=255)                                                                                                                  gAGTGGTTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGttt                       <  1:678395/143‑1 (MQ=255)                                                                                                                  gAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTTATTCTTTTTACCGCGCAGCAGTGGGGTAACCCGCCATAACCGAGGATCTTATGCTTTAAAGAAGTATCGAGGATGGGACTGttt                       >  2:499150/1‑143 (MQ=255)                                                                                                                  gAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTGCTTTAACGAAGTATTCGGGATCGGACTGttt                       >  1:165895/1‑143 (MQ=255)                                                                                                                  gAGTGATTTCTCACTCCCCCTTTCCACTTAATGCAGTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGttt                       <  1:439288/143‑1 (MQ=255)                                                                                                                    gTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGACCGGACTGttttt                     >  2:37617/1‑143 (MQ=255)                                                                                                                      gATTTCGCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAAAAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCa                   <  1:125753/143‑1 (MQ=255)                                                                                                                            tcACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTa             >  2:5875/1‑143 (MQ=255)                                                                                                                             cACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTGTTCAGGATCGGACTGTTTTTCACCGTTaa            >  2:588520/1‑143 (MQ=255)                                                                                                                               cTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATg          <  2:251955/143‑1 (MQ=255)                                                                                                                               cTCCCCCTTTCCACCTAATGCGTTATTTCCAGCAAATCAGACAGTAACTCTTTTTACCGCGACGCAGTAATGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATg          <  2:493036/143‑1 (MQ=255)                                                                                                                                     cTTTCCACTTCATGCCTTATTTCCAGCGAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATGGTGATg    <  1:12973/143‑1 (MQ=255)                                                                                                                                       ttCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATGGTGATGGc  >  2:245529/1‑143 (MQ=255)                                                                                                                                       ttCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCATTAAAGAAGTATTCAGGATCGGACAGTTTTTCAACGTAATGGGTTATGGc  >  1:212974/1‑143 (MQ=255)                                                                                                                                       |                                                                                                                                               GCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATGGTGATGGC  >  NC_000913/1715800‑1716076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.