New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	5 (0.120)	48 (1.140)	30/284	0.4	90.6%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					intergenic (‑5/+146)	wbbL/insH1	pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator

TTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2101609‑2101886                                                                                                                                             |                                                                                                                                          ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTCTTaagga                                                                                                                                         >  1:244128/1‑143 (MQ=255)  tCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaa                                                                                                                                        <  1:380351/143‑1 (MQ=255)        tACATAAAGTAACCTTGATCGAAGCCATTTACACGCTAACAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCg                                                                                                                                  <  2:496627/143‑1 (MQ=255)             aaaGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTCTTATTAAGGAAGGTGCGAAtta                                                                                                                             >  1:615858/1‑141 (MQ=255)                 tAACCTTGGTCGAAGCCATTTACACGCACAAAAGCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                         <  1:419240/143‑1 (MQ=255)                 tAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                         <  1:237469/143‑1 (MQ=255)                 tAACCGGGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTGCCTGGGTGAATCACCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                         <  2:726453/143‑1 (MQ=255)                      ttGATCGAAGCCATTTACCCGCCCAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACATCCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                    <  1:427939/143‑1 (MQ=255)                        gATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAGTTTTTGTTTTGTTAAGGAAGGTGCGAATAAGCGGGGaggtt                                                                                                                  >  2:69363/1‑139 (MQ=255)                          tCGAAGCCATTTACACGCACAAAATCTGAACAAAGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                                                                <  2:568782/143‑1 (MQ=255)                           cGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCATCATAAATGATCCTGCGCACTAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGGATTTTTGTTGTGTTAAAGAAGGTGCGAATAATCGGGCAAAtgctt                                                                                                               >  2:151852/1‑143 (MQ=255)                                gcATTCACACGAACAAAATCTAAAAAACCTACCAGCATAAATGATCCTTCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                          <  1:660360/142‑1 (MQ=39)                                ccATTTACACGCACAAGATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                          <  2:36774/143‑1 (MQ=255)                                ccATTTACACGCACAAAATCTGAAACACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAAAATACACACTCTCTTGAGGAATTTTTGTTTTCTTAAGGTAGGGGCGAATAAGCGGGACAATTctcctctg                                                                                                          >  1:186914/1‑141 (MQ=255)                                  aTTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTTCGCACTAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                        <  2:335820/143‑1 (MQ=255)                                  aTTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                        >  2:288390/1‑143 (MQ=255)                                             caAAATCTGAAAAACGTACCAGCATAAAAGAGCCGGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                                                             <  2:304171/143‑1 (MQ=255)                                                 aTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                                                                         <  2:477995/143‑1 (MQ=255)                                                  tCTGACAAACGGACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTGAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                        <  1:98357/143‑1 (MQ=255)                                                  tCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGCATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                        >  2:385035/1‑143 (MQ=255)                                                     gAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGAGAAATTCTTCTCGGATGAACACTTCatttcatttc                                                                                     >  1:64099/1‑143 (MQ=38)                                                       aaaaCGTAGCAGCAGAAATCATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTATGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                                   <  1:10608/143‑1 (MQ=255)                                                        aaaCGTAGCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                                                                  <  1:56916/143‑1 (MQ=255)                                                          aCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                                                                <  1:257264/143‑1 (MQ=255)                                                              aCCAGCATAAATGATCCTGCGCACCAAGCAACAACCGTATCAGAATAGATACTCACACTACGAATTTATAAATCATTAAGGAAGGTGCGAATAAGCGTGGCATTTCCTAAGGGCTGACCCAGTCATTTCATTTCTTCATGttt                                                                            <  1:295886/143‑1 (MQ=16)                                                                cAGTATAAATGATCTTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                          <  2:481853/143‑1 (MQ=255)                                                                cAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTTCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                          <  1:528954/143‑1 (MQ=255)                                                                     tAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                                                                     <  1:360724/143‑1 (MQ=255)                                                                      aaaTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                                                                    >  2:345866/1‑143 (MQ=255)                                                                      aaaTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGAGACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                                                                    <  1:612271/143‑1 (MQ=255)                                                                            tCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                              >  2:478359/1‑143 (MQ=255)                                                                                gcgcACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                                                          <  2:58977/143‑1 (MQ=255)                                                                                       aaTCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTCAGCCGCTCTTTTCTCCCTTCAATg                                                   >  1:538430/1‑143 (MQ=21)                                                                                        aTCAACAACCGTATCAGAATAGATACTTTCTTAAGGACTTTTTGTTTTATTAAGGAAGGTGCGAATACGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTCTTTCTCGCGTACATGc                                                  >  2:545471/1‑143 (MQ=21)                                                                                                   tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATGTTTTCTCCCGTAAATGCGTTGAATCatc                                       >  1:511342/1‑141 (MQ=255)                                                                                                     tCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGAGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTATATGCCTTTAATCAGCCt                                     >  1:365648/1‑143 (MQ=255)                                                                                                        gAATATCTACCTTCTTTAGGAATTTGTGTCTTATTCATGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTGGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt                                  <  1:503676/143‑1 (MQ=14)                                                                                                               tACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCg                           >  2:569385/1‑143 (MQ=255)                                                                                                                      tttAGGAATTTTTGTTTTATTAAGGAAGGTGCGTATATGCTGGGAAATTCTTCTCTGCTTACTCAGTCATTTCATTTCTTCATGTTTGAGCTGATTTTTTCTCCCGTAAATGCCTTGAATCAACCTATTTAGACCGTttcttc                    <  1:99604/143‑1 (MQ=14)                                                                                                                      tttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGGCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAACGTtttttc                    <  1:683131/143‑1 (MQ=255)                                                                                                                         aGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                              <  1:371753/98‑1 (MQ=255)                                                                                                                         aGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATATTTGAGCCGATTTTTtc                                                              >  2:371753/1‑98 (MQ=255)                                                                                                                           gAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTCACTGCCTTGACTCAGCCTATCTAGCCCGTTTCTCCGCCac               >  1:111158/1‑142 (MQ=14)                                                                                                                                  tGTTTTATTAATGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGTTGTCTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGc        <  1:478359/143‑1 (MQ=255)                                                                                                                                    ttttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCTGCTGACTCAGTCATTTCATTTCTTCATGTTTGTGCCGATTTTTTCTCCCTTATATGCCTTGGATCTGCCTATTTAGACCGGTCCTTGCCCCTTTTAGGCgg      >  1:538327/1‑142 (MQ=11)                                                                                                                                     tttATCAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGtt     <  2:450560/143‑1 (MQ=17)                                                                                                                                       tattaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTACGGCGTTAt   >  1:407142/1‑143 (MQ=17)                                                                                                                                        attaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCAAttcacggagagagc  >  1:111952/1‑131 (MQ=11)                                                                                                                                             |                                                                                                                                          TTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2101609‑2101886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.