New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 225281NA (NA)10 (0.150) 8/272 7.6 NA noncoding (1511/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 225293 NA (NA)noncoding (1523/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
Rejected: Coverage evenness skew score above cutoff.

GCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/225135‑225281
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGG  <  NC_000913/225293‑225153
                                                                                                                                                                                                                                                                                                
GCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTA                                                                                                                                                   >  2:549209/1‑143
 gCACGGTGAATACGTTCCCGGGCCTTGGACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAA                                                                                                                                                  <  2:601475/142‑1
 cgccgtgGAATGCGCTCCCGGGCCTTGGACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCTCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAA                                                                                                                                                  <  2:1183091/136‑1
 CCACCGCGAATCCGTACACGGTCATTCTCCACACCGCCCGTCACACTATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAA                                                                                                                                                  <  2:497109/143‑1
  CACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGCGTGGGTTGCAAAAGACGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGGCTGGGGGGGAGTCGTAACAGGGTAca                                                                                                                                                 >  2:238255/1‑141
  CACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGGTTCATGACTGGGGTGAGGTCGTGGCAAGGTAAC                                                                                                                                                 >  1:517510/1‑143
  CACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAAC                                                                                                                                                 >  1:602412/1‑143
   ACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACC                                                                                                                                                >  1:458373/1‑143
   ACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACC                                                                                                                                                >  2:915560/1‑143
   ACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACC                                                                                                                                                >  2:1073051/1‑143
   ACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTACGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGCGAAGTCGTAACAAGGTCACC                                                                                                                                                >  2:831745/1‑143
    CGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGCGGGCGCTTACCAATTTGTGAGGCCTCACTGGGGTGAAGTGGTAGCAAGGTGACCG                                                                                                                                               >  2:1145921/1‑143
      GTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCAGGGGAGTGGGTTGCAAAAGAAGTAGGTAGCGTAACCTTCGGGAGGGCGCTTACCACTTTGTGGTGTATGACTGGGGAGGAGTGGTAACAAGGTGACCGga                                                                                                                                             >  2:885336/1‑141
         AATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTCGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACACGCTCACCGCAGGg                                                                                                                                          >  2:338833/1‑142
                  cctGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCCCTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGCAGGTTCCCCTACG                                                                                                                                 <  1:224373/140‑1
                   CGGGCCTTGTGCCCAGCGCCCGGCGCACCATGGGGGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGCAGGTTCCCCTACGG                                                                                                                                <  2:54906/143‑1
                    GGGCCTTGTACACACCGCCCGTCACACCACGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGCAGGTTCCCCTACGGT                                                                                                                               <  2:952398/143‑1
                       CCTTGTACACCACGCCTGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGCAGGTTCCCCTACGGTTAC                                                                                                                            <  1:735076/143‑1
                       CCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGCAGGTTCCCCTACGGTTAC                                                                                                                            <  2:500020/143‑1
                       CCTTGGACGCACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCGTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGCAGGTTCCCCTACGGTTAC                                                                                                                            <  2:742215/143‑1
                         gTGTACACGCCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTGGTGATTCCTGACTGGGGTTAAGTCGTAACAAGGTAACCGCAGGTTCCCCTACGGTTACCT                                                                                                                          <  1:930422/142‑1
                                                                                   CCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGCAGGTTCCCCTACGGTTACCTTG                                                                                                                        >  2:233980/1‑87
                                                                                   CCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGCAGGTTCCCCTACGGTTACCTTG                                                                                                                        <  1:233980/87‑1
                                                                                                                                         gatcccgCCGCAGGTTCCCGGTCGGTTACCGTGTTACGACTTCACCCCAGGCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTAGTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACA          <  2:765050/136‑1
                                                                                                                                               ACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGAGCCCTCCCGAAGGTTAAGCTACCTACATCTTTTGCAACCCCCTACCATGGAGTGCCGGGCCGCCTGCACGAGGCCa    >  2:180923/1‑142
                                                                                                                                                CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACTTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCG   <  1:618305/143‑1
                                                                                                                                                CCGCAGGTTCCCCTACGGTTACCTTGCTACGTCCTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCG   <  2:917276/143‑1
                                                                                                                                                CCGCAGGTTCCCCTACGGGTACCTTGTTACGACTTCCCCCCAGTCATGAGTCACAAGGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCG   <  2:668847/143‑1
                                                                                                                                                CCGCAGGATCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAACGTGGTAAGCGCCCTCCCGAACGTTAAGCTACATACTTCTTTTGCAACCCACACCCATGGTGCCACAGGCGGTGTGTCCAAGCCCCG   >  2:1060333/1‑143
                                                                                                                                                 CGCATGTTCCGCTACGGTGACCTTGTTACGACTTCACCCCAGTCATGACTCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACGCCCATCGTATTATTGGCTGTGTGTACAAGGCCCGG  <  2:146583/143‑1
                                                                                                                                                 CGCAGGTTCGCCTACGGTTACCTTGTTACGACCTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCGACCCACGGTGATGGTGTGACGGGCGGTGTGTACAAGGCCCGG  <  2:531974/143‑1
                                                                                                                                                 CGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACATAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGG  <  1:52163/143‑1
                                                                                                                                                 CGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGCGCGGTGTGTACAAGGCCCGG  >  2:46290/1‑143
                                                                                                                                                 CGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCAGCAGGTTAAGATACCTACTCCTTTTGCAACCCACCCCCATGGTGTGACGGGCGGTGCGTACAAGGCCCGG  >  2:584872/1‑143
                                                                                                                                                 CGCAGGTTCCCCTACGGTTACCTTGTTACGACTGCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGG  <  1:602207/143‑1
                                                                                                                                                 CGCAGGTGCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGG  <  1:685839/143‑1
                                                                                                                                                 CGCAGGTCCCCCTCCGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGG  <  1:824414/143‑1
                                                                                                                                                                                                                                                                                                
GCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/225135‑225281
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGG  <  NC_000913/225293‑225153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.