| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 62 [0] | [0] 62 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 56 (0.870) | 49/268 | 0.2 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
GATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCC > NC_000913/3909948‑3910225 | ccaggccgcgacccgccggcgcgttcgccagaccgccgccgtccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccggcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCaa < 2:535385‑M2/6‑1 (MQ=255)acagcccgctacccgccagagccttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacattccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCaa < 1:619210‑M2/6‑1 (MQ=255) agcccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacctaccgtcgataccgcgagtgatggtggacattacaatccagatcagccagGCGCAAGc > 1:72506‑M2/136‑143 (MQ=255) cccgctacccgccagagcgttcgccagaccacccccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCtc < 2:965955‑M2/10‑1 (MQ=255) cccgctacccgccagagcgttcgccagaccaccaccttccgtactgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCtc > 2:1042648‑M2/134‑143 (MQ=255) tacccgccagagcgttcgccataccaccacctgccgtattgggcggctgcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCtcagtca < 2:131317‑M2/15‑1 (MQ=255) cgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGaa < 1:1045702‑M2/19‑1 (MQ=255) cgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGaa > 2:913357‑M2/125‑143 (MQ=255) gcaagggcgttcgccagaccaccaccttccggattgggcggcggcgtcatttcagtgaacagcgccagcgagatgccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAAc < 2:196400‑M2/20‑1 (MQ=255) cgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacatacggtcgataccgcgagtgatggtggacattaagatccagatcagccagGCGCGAGCTCAGTCAGGAGCAGGGCGa > 1:474154‑M2/117‑143 (MQ=255) gccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCg < 2:898663‑M2/32‑1 (MQ=255) ccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagctacatcccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGa < 2:1027373‑M2/33‑1 (MQ=255) agaccgccgccgcccggagtgggcggcgccgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGaaa < 2:401286‑M2/35‑1 (MQ=255) gaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaacccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAAc > 2:412771‑M2/108‑143 (MQ=255) accaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGCTACcgaaaat > 1:59425‑M2/107‑141 (MQ=255) caccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccatatcagccagGAGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCa > 1:1052711‑M2/105‑143 (MQ=255) accaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacatacagtcgattccgcgagtgagggtggacattaaaatccagatcagccagACGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAc > 1:1063936‑M2/104‑143 (MQ=255) ccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAcc > 1:953137‑M2/103‑143 (MQ=255) caccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCg > 1:365760‑M2/102‑143 (MQ=255) tccgtattgggcggcggcgtcatttcagtgaacagcgacagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCATGAACCGCGCGATACCGACACTCACCGGGGCg > 2:254328‑M2/97‑143 (MQ=255) tattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGa < 1:788295‑M2/51‑1 (MQ=255) ggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgcgtgatggtggacattaaaatccagatcagccagGCCCAAGCCCAGGCAGGAACAGGGCGATACCGAACCTCACCCGGACGGCGagcacg > 2:458317‑M2/88‑141 (MQ=255) cggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACAGCGGCCAGCAgcgc > 1:1113453‑M2/83‑143 (MQ=255) ggcgtcatttcagtgatcagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGcgcg < 1:1148792‑M2/62‑1 (MQ=255) ggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGcgcg > 1:1014228‑M2/82‑143 (MQ=255) accacagtgaacagcgccagcgacataccggcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAAc < 1:728025‑M2/68‑1 (MQ=255) tttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTACGTCACGATCAGGGCGATACCGAAACCCACCGGGCCGGCGATCAGCAGCGAGAGCAACg > 2:894440‑M2/75‑143 (MQ=255) tgagtgaccagcgccagctgcataccgtcgataccgcgagtgatggtggagattaaaatccagatcagccagGCGCAAGGTCAGTCAGGAACAGGGCGATACCGAAGCTCACCGGGACGGCGATCAGCAGCGCGATAAACGaa < 2:1096868‑M2/71‑1 (MQ=255) gcggtcagcagcgccggcgacatcccgtcgagaccgcgagtgagggtcgacattaaattccagatcagccagGCGCAAGCTCAGCCAGGAACATGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGaa < 2:1132392‑M2/71‑1 (MQ=255) cgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGACCAGGGCCATCCCGGATCTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCa < 1:612623‑M2/75‑1 (MQ=255) agcgccagcgacgtaccgtcgataccgcgagtgatggtggacattaaaagccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAAc < 1:679095‑M2/80‑1 (MQ=255) accgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGCAGTCACGAACGTAccgtagcgcgg > 2:84436‑M2/50‑138 (MQ=255) accgccgataccgcgagtgatggtggacattaaaatccagctcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCgg < 1:789890‑M2/94‑1 (MQ=255) accgccgataccgcgagggatgggggacattaaaatccagagcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCgg < 1:992089‑M2/94‑1 (MQ=255) ccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGAGAACAGCAGCGCGACAAACGAAGTCACCAACGTACCGTAGACCGGc > 2:468181‑M2/49‑143 (MQ=255) gtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCAc < 1:1042648‑M2/97‑1 (MQ=255) cgataccgcgtgttatgggggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCa < 2:1052711‑M2/99‑1 (MQ=255) gcgcgagtgacggtggcccttaaacaccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGcc < 1:488571‑M2/104‑1 (MQ=255) ccgcgagtgatggtggacattaaaatccaaatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTAACCGGGACGACGATCAGCAGCGCGAAAAACGCAGTCACCAACGTACGGTAGACCGGCACCAACGcc > 2:212873‑M2/40‑143 (MQ=255) gcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCgcccg > 1:158711‑M2/38‑142 (MQ=255) agtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATTAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTa < 1:510507‑M2/109‑1 (MQ=255) agtgatggtggacattaaaacccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTa < 1:412771‑M2/109‑1 (MQ=255) tgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGa > 1:956421‑M2/33‑143 (MQ=255) gtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTGCCGTAGATCGGCACCAGCGCCCCGTAGATATCg > 1:148184‑M2/28‑143 (MQ=255) gtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCg > 2:939356‑M2/28‑143 (MQ=255) gtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGGCACCAACGGACCGTAGATCGGCACCAGCGCCCCGGAGATGTCg > 2:784617‑M2/28‑143 (MQ=255) ggtgagtctaaaatccagatcagccacGCGCAAGGGCAGTCAGGAACAGGGCGATCCCGAACCTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCg < 2:225799‑M2/116‑1 (MQ=255) ggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCGGCAGCGCGATAAACGAAGTCACCAACGTACCGCAGATAGGCACCAGAGCCCCGTAGACAGCgta > 2:92620‑M2/26‑142 (MQ=255) gacattaaaatccagatcaaccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTc > 1:250987‑M2/25‑143 (MQ=255) attaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGCTCAGCAGCCCGATAAACGAAGTCACCAACGTACCGTAGCGAGGCACCCGCGCCCCGTAGATATCGTTCGGt > 1:599835‑M2/22‑143 (MQ=255) attaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGt > 1:398369‑M2/22‑143 (MQ=255) catgcccgtgcagccagGCGCAACCTCAGTCAGGAACAGGGCGCTACCGAAACGCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGGACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCAt < 2:1014228‑M2/126‑1 (MQ=255) agcccagggcagcgagGCGCAGTCTGATTGAGGAACAGGCCGATACGGAAACTCACCGGGACGGCGAGCAGCAGCGGGATAAACGAAGTCACCACCGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATc < 2:416429‑M2/127‑1 (MQ=255) gtccagatcagcaagGCGCAAGCTCAGGCAGGAACAGGGCGATACCGAAACGCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATcc < 1:982752‑M2/128‑1 (MQ=255) ccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCCCCGGGCCAGCAAATAGCAGCGCGATAACCGAAGTCACCAACGTACCGTAGATCGGCGCCAGCGCCCCGTAAATAACGCtcggagccagccc > 2:780566‑M2/14‑137 (MQ=255) cagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCAc < 1:772486‑M2/131‑1 (MQ=255) gatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCActc > 1:953673‑M2/11‑143 (MQ=255) tcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCtt < 1:458454‑M2/135‑1 (MQ=255) agccagGCGCAAGCTCAGTCCGGGACAGGGCGATACCGAAGCTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTg < 2:1183175‑M2/137‑1 (MQ=255) ccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCCGCCGCGCGATAAACGACGTCACCCACGTACCGTCGATCGGCACCCGCGCCCCGTCGATACCGTTCGgtgcctcgcagtgctgcgg > 2:541213‑M2/5‑134 (MQ=255) cagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCCATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGAGATCGTTCGGTGCATCGCACTCTTTGGTc > 1:251356‑M2/4‑143 (MQ=255) agGAGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATTAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGAGCTCCGTAGATATCGTTCGGTGCATCCGACTCTTTggtac > 1:619033‑M2/3‑141 (MQ=255) | GATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCC > NC_000913/3909948‑3910225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |