New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3944977NA (NA)17 (0.260) 8/270 7.5 35.7% noncoding (1275/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
?NC_000913 = 4038810 32 (0.470)noncoding (1293/2905 nt) rrlA 23S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.

AAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCC  >  NC_000913/4038672‑4038867
                                                                                                                                          |                                                         
aggCTGCGGGAGCGGCACTGTGGGTTGTTGGGCAGGGGAGCGTTCTGTAAGCCTCGGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGAGAATGCTCACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGcc                                                       <  2:650581/141‑1 (MQ=11)
 aGCGGCGGCAGCGACACTGGGTGTTGTTGGGGAGGGGAGCGTTCTGTAAGCCTGGGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg                                                      <  2:157252/143‑1 (MQ=14)
  gcgccgccAGCGAGCCTATGGGTTGTGGGGTAGGGGAGCGTGCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg                                                     <  1:477009/136‑1 (MQ=11)
  gCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATACGTAACAATAAAGCGGGTGAAAAGCCCGCTCGCCgg                                                     <  1:448974/143‑1 (MQ=255)
    tGCGGCAGCGACACTATGAGATGTGGGTGTGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCTGGaa                                                   <  1:739973/143‑1 (MQ=14)
       gttaGCGACACTATGTGTTGGTGTGTAGGCGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc                                                <  1:94226/140‑1 (MQ=255)
                 cTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAATTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTcc                                      <  2:357236/143‑1 (MQ=25)
                    tgtgTTGTTGGGTAGGGGCGCGTTCTGTAAGCCTGTGAAGGTGTGATGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGt                                   <  1:198773/143‑1 (MQ=21)
                        ttgtcgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa                               <  1:897839/143‑1 (MQ=17)
                          gttgGGTAGGGGAGCTTTTTTGAATCTTGTGAAGGTGTGGTGTGAGGCATGCTGGAGGTATCAGAAGGGCGAAGGCTGACATAAGTGACGAGAGAGGGGGTGGCGCGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACg                             <  1:504006/143‑1 (MQ=11)
                          gttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGGCATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTGCTGTCCAACg                             >  2:957802/1‑143 (MQ=17)
                          gttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCGGCTGGCCGGATGACCAAGGGTTCCTGTCGaagg                             >  1:1054859/1‑141 (MQ=255)
                           ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCATGTCCAACGt                            >  2:551847/1‑143 (MQ=17)
                           ttgGGTAGGGGAGCGTTCTGTAAGCCGGTGAAGGTGTGCGGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGt                            <  2:334081/143‑1 (MQ=17)
                              ggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGACAAGCCCGCTCGCCGGAAGACCAAGCGTTCCTGTCCAACGTTaa                         >  2:457306/1‑143 (MQ=17)
                                 aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg                      <  1:1032765/143‑1 (MQ=32)
                                   gggTGCGTTCTGTAGGCCTGTGGAGGGGTGCTGTGAGGCATGCTGGAGGTAGCAGAAGTGCGAATGCTGACATAAGTAACCATAGAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                    <  2:866119/143‑1 (MQ=11)
                                   gggAGCGTTCCGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                    <  1:666500/143‑1 (MQ=17)
                                    ggAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgggg                   >  1:449440/1‑143 (MQ=32)
                                        cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTCACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTACTCGGGGCAgg               >  2:885810/1‑143 (MQ=17)
                                        cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGAGAAAAGCCCGCTCGCCGGAAGACCAAGGGCTCCTGTCCAACGTTAATCGGGGAAgg               >  2:618127/1‑143 (MQ=12)
                                         gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTACTCGGGGCAggg              >  1:821801/1‑143 (MQ=17)
                                          ttCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt             >  1:980641/1‑143 (MQ=32)
                                           tcagTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATGAAGCGGGTGGAAAGGCCGCTCGCCGGGAGAGCAAGGGTTCCTGTCCAACGGGAATGGGGGCAGGGTg            >  2:431682/4‑143 (MQ=11)
                                             tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAg          >  1:625008/1‑143 (MQ=32)
                                             tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGGGAg          >  2:279370/1‑143 (MQ=17)
                                             tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCGGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAg          >  1:1124758/1‑143 (MQ=17)
                                              gTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCACGCTCGCCGGAAGCCCAAGGGTTCCTGTCGAACGTTAATCGGGGAAGTGTGAGt         >  2:98710/1‑143 (MQ=11)
                                              gTAAGCCTGTGAAGGTGTGCTGTGAGACATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGAGTGAAAAGCCAGCTCGCCGGAAGACCAAGGGTTCCTGCACAACGTAAATCGGGGCAgggagggt         >  2:956812/1‑138 (MQ=11)
                                                  gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACGTAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc     >  1:1100274/1‑143 (MQ=17)
                                                    cTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc   >  1:1130909/1‑143 (MQ=32)
                                                     tgtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATAGAGGCAGGTAGGTTCGAcccc  >  1:434100/1‑143 (MQ=11)
                                                                                                                                          |                                                         
AAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCC  >  NC_000913/4038672‑4038867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.