Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 88 [0] [0] 87 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)80 (1.270) 63/262 0.0 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815715‑3815999
                                                                                                                                              |                                                                                                                                              
aaCACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC                                                                                                                                                >  1:643850‑M1/1‑143 (MQ=255)
   ccctGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt                                                                                                                                             <  2:538022‑M1/142‑4 (MQ=255)
    ccTGCTTGCTCAGCGCAAATTCAATAAACCGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                            <  1:333388‑M1/143‑5 (MQ=255)
         ttgctAATCTCAAATTCAATACACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctg                                                                                                                                       <  2:255240‑M1/143‑10 (MQ=255)
          tgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgc                                                                                                                                      <  1:485668‑M1/143‑11 (MQ=255)
           gctAAGCGCAAATTCGATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACACACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                     <  1:785296‑M1/143‑12 (MQ=255)
           gcgaagcgCAAATTCAATAAACTGGAGCTGATATGGTTTCATGCCCTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                     <  1:790198‑M1/140‑12 (MQ=255)
            ctAGGCGCAAATTCAATAAACTGGCGCTGAGATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                    <  2:448061‑M1/143‑13 (MQ=255)
             tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcact                                                                                                                                   >  2:468249‑M1/1‑130 (MQ=255)
                gcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATAAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctcgacttcg                                                                                                                                >  1:1186719‑M1/1‑127 (MQ=255)
                gcgcAAAGTCAAAAAACTGGCGCTGATATGGTGTCATGCCTTCGCTACTCATCCTACTTGTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttca                                                                                                                                <  2:51402‑M1/143‑17 (MQ=255)
                 cgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtgccctgcacttcac                                                                                                                               >  1:822832‑M1/1‑126 (MQ=255)
                  gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                              >  2:624587‑M1/1‑125 (MQ=255)
                  gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGACGACTCATCAGTCGCATTAAAAATCAGTTTGCCGGCGCCGCCTTCTGCcgtgccctgcacttcact                                                                                                                              >  1:833942‑M1/1‑125 (MQ=255)
                      aTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                          >  1:208197‑M1/1‑121 (MQ=255)
                       ttCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                                                                         <  1:419870‑M1/143‑24 (MQ=255)
                          aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc                                                                                                                      >  1:418284‑M1/1‑117 (MQ=255)
                          aaTAAACTGGCGCTCATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc                                                                                                                      <  1:345943‑M1/143‑27 (MQ=255)
                           tgcacttcgtctgtatatggttgcacgccttcGTTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc                                                                                                                     <  2:1063420‑M1/129‑28 (MQ=255)
                           agaaactGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACACATATAAGGTGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc                                                                                                                     <  2:1028902‑M1/141‑28 (MQ=255)
                            tAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAACAAGGCGACTCATCAGTCGCCTTAAACATCAGTTTGCCAGCGCCGCCTTCCGCcgtcccctgcccttcaatgatgcgcccg                                                                                                                    >  2:779969‑M1/1‑115 (MQ=255)
                                cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctt                                                                                                                <  2:29268‑M1/143‑33 (MQ=255)
                                cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctt                                                                                                                >  1:949653‑M1/1‑111 (MQ=255)
                                  ggCGCTGATACGGTCTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  1:212361‑M1/143‑35 (MQ=255)
                                     gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                           <  2:604458‑M1/143‑38 (MQ=255)
                                     gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccggctcccgtc                                                                                                           >  2:1130721‑M1/1‑106 (MQ=255)
                                     gcTGATATGGTTTCATGCCTTCGCGCCGCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                           <  2:32999‑M1/143‑38 (MQ=255)
                                         atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                                       >  1:30795‑M1/1‑102 (MQ=255)
                                          tatGGTTTCATGCCTTCGCTCCTCATCTTACTGTTCTACAGACAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatccgcccgtcttcggtcagcact                                                                                                     >  2:623727‑M1/1‑100 (MQ=255)
                                                 tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               >  1:1057626‑M1/1‑94 (MQ=255)
                                                 tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               <  1:1104432‑M1/143‑50 (MQ=255)
                                                 tCATGCCTTCGCTCCTCATCTTACTTGTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               <  1:1104862‑M1/143‑50 (MQ=255)
                                                   ataccctcagtcctcaccatactgtTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcggccccggcacttcaatgatgcgcccgtcttcggtcatcactacgttcat                                                                                             <  2:20246‑M1/133‑52 (MQ=255)
                                                   aTGCCTTCGCCCCTCATCTTACTTTTCTACAGCCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcat                                                                                             <  2:1117070‑M1/143‑52 (MQ=255)
                                                     gCCTTCGCTCCTCCTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt                                                                                           <  2:1168515‑M1/143‑54 (MQ=255)
                                                     gCCTTCCCTCCTCATCTTACTTTTCTACGGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTGTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt                                                                                           <  1:205877‑M1/143‑54 (MQ=255)
                                                       cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcg                                                                                         <  1:447906‑M1/143‑56 (MQ=255)
                                                           gCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatcatgcgccagtcttcggtcagcactacgcccataacagcaa                                                                                     >  2:412052‑M1/1‑84 (MQ=255)
                                                            ctcctcATCTTACTTTTCTACAGACAAAAAGAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttccctgatgcgcccgtcgtccgccactactcagtgcctgccggtctc                                                                                    >  1:1141660‑M1/1‑83 (MQ=255)
                                                            ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcttgtcggtctc                                                                                    >  1:282984‑M1/1‑83 (MQ=255)
                                                               ctcATCTTGCTTTTCTACATACAAAACTAAGGCGACTCCTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactccaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc                                                                                 <  2:629491‑M1/143‑64 (MQ=255)
                                                               cccatCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCACCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc                                                                                 <  1:624587‑M1/141‑64 (MQ=255)
                                                                    cTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctcttcggcag                                                                            >  1:533385‑M1/1‑75 (MQ=255)
                                                                    cTTACTCTGCAACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcag                                                                            <  1:305157‑M1/143‑69 (MQ=255)
                                                                     ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           <  1:1025657‑M1/143‑70 (MQ=255)
                                                                       aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtacatggcggtctctgcggcagagt                                                                         >  2:770538‑M1/1‑72 (MQ=255)
                                                                          ttacaccagccacAAAAAAAGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                      <  1:73545‑M1/137‑75 (MQ=255)
                                                                          tgtctACAGACAAAAAAAAGGCGACTCAGCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                      <  1:738196‑M1/141‑75 (MQ=255)
                                                                             cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                                   <  2:615013‑M1/143‑78 (MQ=255)
                                                                              tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                  >  1:848214‑M1/1‑65 (MQ=255)
                                                                              tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                  >  1:544940‑M1/1‑65 (MQ=255)
                                                                               aCAGACAAAAAAAAGGCGACTCATCAGTCGCCATAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcgtcgggcatcactacgttcaggtcggtctctgcggcagaggcttcgacg                                                                 >  1:21713‑M1/1‑64 (MQ=255)
                                                                                 aGACAAAAAAAAGGCGACTCATCATTGGCTCTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgggcatcactacgcgcatgtcggtctctgcggcagcgcctccaacgca                                                               >  2:1038878‑M1/1‑62 (MQ=255)
                                                                                  gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagggtcttccacctat                                                              >  2:663542‑M1/1‑61 (MQ=255)
                                                                                   aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatt                                                             >  1:737283‑M1/1‑60 (MQ=255)
                                                                                     aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccccgcacttcaatgatgcgcccgccctcgctcaacactacgttcaggtcggtctctgccgcagagccctcaacgtattcc                                                           >  2:355368‑M1/1‑58 (MQ=255)
                                                                                       aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCGGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacggtcctgtcggtctctgcggcagagtcttcaacgtattctac                                                         >  1:622261‑M1/1‑56 (MQ=255)
                                                                                        aaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgctgcgcccgtcttcggtcatcactacgttcctgtcggtctctgcggcagcgtcttccacgtattccaga                                                        >  1:59504‑M1/1‑55 (MQ=255)
                                                                                         aagaggcGACTCACCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                       <  2:169321‑M1/140‑90 (MQ=255)
                                                                                         aaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                       <  1:602298‑M1/143‑90 (MQ=255)
                                                                                          aaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc                                                      <  1:964166‑M1/143‑91 (MQ=255)
                                                                                           aaGGCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaccgtcttccagatcg                                                     >  2:3877‑M1/1‑52 (MQ=255)
                                                                                             ggCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggccgcgccttcaacgtattccagaccgca                                                   >  2:767974‑M1/1‑50 (MQ=255)
                                                                                              gcgccccgccggtcgccttaaagACCAGTCTGCCAGCGCCGCCTTCTGGcgtcccctgcacctcaatgatgcgcccgacttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccacatcgcaa                                                  <  2:1163842‑M1/132‑95 (MQ=255)
                                                                                                   tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgc                                             <  1:468249‑M1/143‑100 (MQ=255)
                                                                                                     atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggccgagtcttcttcgcagtccagttcgcaaacagcat                                           >  1:230781‑M1/1‑42 (MQ=255)
                                                                                                         gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcatgtcggtctctgcgccagagtctccaccgtattccagatcgcacaccgcctcgcc                                       >  2:314170‑M1/1‑38 (MQ=255)
                                                                                                            ccctTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtt                                    <  2:858744‑M1/142‑109 (MQ=255)
                                                                                                             ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcatgtcggtctctgcggcagagtcttctccgtcttccagctcgcacagcgcgtcgccgtaa                                   >  1:73280‑M1/1‑34 (MQ=255)
                                                                                                               ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgggcatcactccgttcatgtcggtctctgcggcagagtcttcaccgtcttccagatggcacaccccttcgccgttccc                                 >  2:767483‑M1/1‑32 (MQ=255)
                                                                                                                  aaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcacaccgcttagccgttcacaat                              >  2:439755‑M1/1‑29 (MQ=255)
                                                                                                                   aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaatt                             <  1:1001362‑M1/143‑116 (MQ=255)
                                                                                                                   aaaGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaatt                             <  2:418284‑M1/143‑116 (MQ=255)
                                                                                                                    aaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                            >  1:967272‑M1/1‑27 (MQ=255)
                                                                                                                    aaTCAGTCTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                            <  2:319611‑M1/143‑117 (MQ=255)
                                                                                                                      tCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccg                          >  1:993137‑M1/1‑25 (MQ=255)
                                                                                                                       cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                         <  2:30795‑M1/143‑120 (MQ=255)
                                                                                                                        aGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac                        <  2:208197‑M1/143‑121 (MQ=255)
                                                                                                                          tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcccgatcgcaaaccgcttcgccgttcacaatcgcgacag                      >  1:584547‑M1/1‑21 (MQ=255)
                                                                                                                          tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagataggaaaccgcctcgccgttcaccattccgcccg                      >  2:348299‑M1/1‑21 (MQ=255)
                                                                                                                                cgcgccGCCTTCTGCcgtcccctgcacttcaatgatgctcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtccccaattccgccagaaactg                >  1:814721‑M1/2‑15 (MQ=255)
                                                                                                                                      gccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggcta          <  2:1057626‑M1/143‑135 (MQ=255)
                                                                                                                                       ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgccacaaaccacgcccac         >  2:504219‑M1/1‑8 (MQ=255)
                                                                                                                                       ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcagcagagtcttcaacgtattccagatcgcaacccgcttcgccgtccacaattccgacagaacccgcggccac         >  1:1012065‑M1/1‑8 (MQ=255)
                                                                                                                                           cTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatc     >  1:765680‑M1/1‑4 (MQ=255)
                                                                                                                                           cTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggacgagccttcaacgtattccagatcgcaaaccgcttcgacgttcacaattccgccagaaactgcagctaccatc     >  2:1032649‑M1/1‑4 (MQ=255)
                                                                                                                                              ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctcttcggcagagtcttcaacgaaaaaaaaatcacaaaccgcatcaccgttcacaattccgacagaaactacggctaccatccct  >  1:25135‑M1/1‑1 (MQ=255)
                                                                                                                                              ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtccaccattccgacagaaacaccggccacccaccgc  >  2:740512‑M1/1‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815715‑3815999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: