New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2729628 =	NA (NA)	7 (0.150)	5/272	6.3	NA	noncoding (1528/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
	?	NC_000913	2729650 =	NA (NA)					noncoding (1506/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

TTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGA  >  NC_000913/2729493‑2729705                                                                                                                                        |                                                                              ttCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAg                                                                        <  2:429467/143‑1 (MQ=255)  tCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTTATCACTTCAAATTACGCTTCTTTAAGTTAAGGAGATGATCAAACCGCAgg                                                                       >  2:50148/1‑143 (MQ=11)     ttAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTc                                                                    >  2:289718/1‑143 (MQ=255)     ttAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTCATCCAAACGCacgatc                                                                    >  1:117012/1‑138 (MQ=255)       agtAGAAAGCGCACGGCCTTATTCTCTTCAGCCTCACTCCCGACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTccc                                                                  <  1:418174/141‑1 (MQ=255)       aaTAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTccc                                                                  <  1:233990/143‑1 (MQ=39)           gAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTAc                                                              <  2:195047/143‑1 (MQ=40)           gAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTATTTAAGGTAAGGAGGGGACCCAACACCAGGTTCCCCtca                                                              >  1:527903/1‑141 (MQ=14)            aaaGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACg                                                             <  1:685417/143‑1 (MQ=255)                                   ccgCCTCACTCCCACCTCGTAACCGCCTTGCTATTCACTTTTCATCGGACGATCTGTGTGAGCACTGCACAGTACGCTTCTTTAAGGTAAGGAGGTGCTGCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAccc                                      <  1:61506/141‑1 (MQ=14)                                   cAGCCTCACTCCCAACGGGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAccc                                      <  1:776167/143‑1 (MQ=255)                                    aGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGGGCACTGCAAAGTACGCTTCTGTAAGGTAAGGAGGTGATCCAACCGCAGGCTCCCCTACGGTTACCTTGTTAGGAATTCAcacc                                     >  1:287247/1‑143 (MQ=14)                                       cTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGt                                  <  1:417264/143‑1 (MQ=40)                                        tCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAGAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCAAGTc                                 >  2:222648/1‑143 (MQ=255)                                          aCTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCAt                               <  1:69636/143‑1 (MQ=40)                                          aCTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCAt                               >  2:382337/1‑143 (MQ=255)                                            tCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGCAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTCGTTACGACTTCACCCCACGCATgc                             >  1:509721/1‑142 (MQ=255)                                            tCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGGGAGCACTGCAAAGTACGCTTCTTTCAGGTAAGGAGGTGACCCAACCGCAGGCTCCCCTACGGTTACCTGGTTCCGACTTCACCCCAGTCACGa                             >  1:626148/1‑143 (MQ=14)                                             cccAACGCGTAAACTTCTTTCTATTCACTTTTCCTCAGACATTCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGaa                            <  1:41909/143‑1 (MQ=14)                                              ccAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAAt                           <  2:744822/143‑1 (MQ=255)                                              ccAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAAt                           <  2:831185/143‑1 (MQ=255)                                              ccAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGGGATCCAACCGACGGTGTGACTACGCTTACCTTGTTACGACTTCACCCCAGTCAtcacg                           >  1:608065/1‑139 (MQ=14)                                               cAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGATACGTTGGTGCGACTTCACCCCAGTCATGaacc                          >  2:28379/1‑141 (MQ=255)                                                caCGCGCAACCGCCTTGCTATTCACGTTTCATCAGACAATCTGTGTGAGTACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATca                         <  2:620752/142‑1 (MQ=255)                                                aaCGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATca                         <  2:640693/143‑1 (MQ=40)                                                aaCGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATca                         <  1:367532/143‑1 (MQ=40)                                                aaCGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATca                         <  1:186592/143‑1 (MQ=39)                                                   gcgTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaa                      <  2:697236/143‑1 (MQ=40)                                                    cgtggaCGCCTTGCTATTCACTTTGCATCAGCCAATCTGTGTGAGCACTGCCACGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGACTCACaaa                     <  1:478477/138‑1 (MQ=11)                                                                       aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGTTAAGCGCCCTCCCGa  >  2:312191/1‑143 (MQ=14)                                                                       aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGa  >  2:44318/1‑143 (MQ=31)                                                                       aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCACCCTCCCGa  >  2:739009/1‑143 (MQ=14)                                                                                                                                        |                                                                              TTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGA  >  NC_000913/2729493‑2729705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.