New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4295940	18 (0.360)	7 (0.150)	5/268	6.2	29.0%	noncoding (107/602 nt)	RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites	RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites
	?	NC_000913	= 4296023	NA (NA)					noncoding (190/602 nt)	RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites	RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites
Rejected: Coverage evenness skew score above cutoff.

TGCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGT  >  NC_000913/4295802‑4296082                                                                                                                                           |                                                                                                                                               tGCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTCATGCCGCGTCCGACAtgc                                                                                                                                            >  1:341738/1‑141 (MQ=255)     ggggATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGc                                                                                                                                        <  2:246756/143‑1 (MQ=255)             ccACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCg                                                                                                                                >  2:229553/1‑143 (MQ=255)                    gCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCttg                                                                                                                         >  1:833817/1‑142 (MQ=255)                      aaTGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAc                                                                                                                       <  1:508474/143‑1 (MQ=38)                       aTGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTGAcg                                                                                                                      >  2:139255/1‑143 (MQ=38)                          tgtgAATGCCTGATGCGACGCTTGCCGCGTATTATCAGGCCTACGCCAGACAAAGAAATAGCCTGATTTAGAGAGATTTTGTAGGTGGGATAAGGCGTTTATGCCGCATCCGACATAAACACCTGATGCGAAGCTTaccacga                                                                                                                   >  1:220425/1‑137 (MQ=11)                          ggggagtGCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt                                                                                                                   <  1:732557/137‑1 (MQ=2)                            tgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCACTAGCGTGATTTGGGGTGATTTTGAGGGTCGGATAGGGCGTAGATGTCGCATGTGGCCGCAACGTCAGATGGGACGGGTGACGCGTCt                                                                                                                 >  1:389515/1‑143 (MQ=2)                               aTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGcgttaagcgtcgcat                                                                                                              <  1:718750/143‑15 (MQ=255)                                                                                                                        gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt                     >  2:776311/1‑143 (MQ=17)                                                                                                                                gccgggtgcGACATCAATGCCTGGTTGGATGCTTAACGCGTCTTATCAGGCCTACGCGCGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGAc             <  1:87528/135‑1 (MQ=11)                                                                                                                                 ccGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTCATCAGCCCTACGCCAGCCAGCGCGATAGCCTGGTTGGGCGTGATGTTGTAGGTCGGGTACGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg            >  1:412294/1‑143 (MQ=11)                                                                                                                                   gcacacGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCt          <  1:33500/138‑1 (MQ=17)                                                                                                                                    cATCCGACATGAACGCCTGATGCGACGCTTCACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAGAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt         <  2:383667/143‑1 (MQ=12)                                                                                                                                       ccGCCATCAACGCCTCATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGACTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc      <  2:567575/143‑1 (MQ=12)                                                                                                                                          aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgcg   >  1:340316/1‑143 (MQ=32)                                                                                                                                           cATCTACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGACAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGt  <  1:548617/143‑1 (MQ=12)                                                                                                                                           |                                                                                                                                               TGCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGT  >  NC_000913/4295802‑4296082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.