New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3423374 =	62 (1.250)	7 (0.140)	6/278	5.9	10.3%	intergenic (+182/+47)	yhdZ/rrfF	putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
	?	NC_000913	3423663 =	NA (NA)					intergenic (‑10/+3)	thrV/rrfD	tRNA‑Thr/5S ribosomal RNA of rrnD operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCA  >  NC_000913/3423521‑3423800                                                                                                                                               |                                                                                                                                          cgcgCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAAtt                                                                                                                                           <  1:687347/143‑1 (MQ=255)         tGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCt                                                                                                                                   <  2:782867/143‑1 (MQ=255)          gccgccAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTGCCCACGCTCCGCTCTAGTAACGCCGCCATATCAGCACGCTACACTTGATGCCTg                                                                                                                                  >  1:341737/1‑143 (MQ=255)          gccgccAGACAAATTCTTTTCTAATCTGCCGAACTAAATCCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGTGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCta                                                                                                                                  >  1:476023/1‑142 (MQ=255)           ccgccAGACAAAGTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCTAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTgg                                                                                                                                 <  1:100888/143‑1 (MQ=255)                   cAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTccc                                                                                                                         <  2:423947/143‑1 (MQ=255)                     aaTTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTa                                                                                                                       <  1:202830/143‑1 (MQ=255)                       ttCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTGACCAAGGGTGCGCTCTACCAACTGCGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTAcc                                                                                                                     >  1:566231/1‑142 (MQ=255)                                   cTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCATTCTTATCATTTGTTCTCTTTATCAACTGAGCCATAGCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGga                                                                                                         <  2:210244/143‑1 (MQ=37)                                   cTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCTTACTCTCGCGTGGGga                                                                                                         >  2:127518/1‑143 (MQ=255)                                        gaccTTTAACCTCAAAAGGGGTGCTGATACCCAGAGTCGAACGGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAccc                                                                                                    <  2:226109/140‑1 (MQ=255)                                           cTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCTAGGGTGCGCTCTACCAACTGAGCCTTATCAGCACGCTAAATTTGATGCCTGGCAGTTGCCTACTCTCGCATGCGGAGCcccccc                                                                                                 >  1:428221/1‑141 (MQ=37)                                            tttAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCGTACAAAGGGTGCGCTCTACCAACTGAGCCAGATCAGCACGCTAAATGTGATGCCTGGCAGTTCGCTAGTCTAGCAGGGGAAGACCCcgca                                                                                                >  1:580443/1‑143 (MQ=25)                                                  cTAAAAAGTGGTGCTGATACCCAGAGCCGAACTGCGGACCTCACCCTTACCAATGGTGCTCTCTAACAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAGCCCACAATACCa                                                                                          >  2:208547/1‑143 (MQ=37)                                                      aggggggtgCTGATACTCGTAGGCGAACTCGGGACCTCACAGTTACCAAGGGTGCGCGCTACCAACGGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCgg                                                                                      <  2:792711/138‑1 (MQ=21)                                                          tggtgCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCGACTCTCGCCTGGGGAGACCCCACGCCAACATCGGCGCt                                                                                  >  1:447143/1‑143 (MQ=37)                                                                 gATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAAGGTGCGCTCTACCAACTGAGCCATATCAGCCCGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACGCTACCATCGGCGCTACGGCGt                                                                           >  1:146291/1‑143 (MQ=255)                                                                   tACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGttt                                                                         <  2:130916/143‑1 (MQ=255)                                                                     cccAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCa                                                                       <  2:620902/143‑1 (MQ=255)                                                                                        gcgcACCCTTGGTAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGATTCACTCCTGAGTTCGGCACggg                                                    >  1:5607/4‑143 (MQ=18)                                                                                            aCCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCATACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTCGAGTTCTGAGTTGGGCATGGGGtga                                                >  2:145103/1‑141 (MQ=21)                                                                                              ccTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTAGGCATGGGGTCAgg                                              >  2:479400/1‑143 (MQ=255)                                                                                                ttACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTATGGGTTCGGGATGGGGTCCgggg                                            >  2:517651/1‑141 (MQ=255)                                                                                                    taaGGGTGCGCTCCCCCTCCTGTGCCAGAGCAGCACCCGAAATTTGATGCCTGGCAGTCCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACTGCGTTTCACGTCTGAGTTCGGCATGGGGTCAGGTGGGac                                        <  2:146890/142‑1 (MQ=14)                                                                                                             gcTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTCCGGCGTTTCACTTCTGAGTTCGGCATGGGGCCCGGTGGCACCACCGCCCt                               >  1:162963/1‑143 (MQ=17)                                                                                                               tctACCAACTGAGCCATATCAGCACGCTAAATTTGCTGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCAACACTACCATCCGCGCTCCGACGGTTCACTTCTGACTTCGGCGTGGGGTCCGGTGGGTCCACCGCGCtcc                             >  1:322166/1‑141 (MQ=17)                                                                                                                ctACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCCTCGGCGCTACGGCGATACACCTCTGAGGACGGCAAGGGGACAGGGGGGACCACCGCGCAACg                            >  2:408817/1‑143 (MQ=17)                                                                                                                      aCTGAGCCACATCAGGACGCTAAATGTGACGCCTGGCAGTTCCGTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCGGAGCTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGgccgcc                      <  2:566231/143‑1 (MQ=14)                                                                                                                        tGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTAGGCCTGGGGTCAGGTGGGACCACCGCGCTCCGGCCCCCat                    >  2:319003/1‑142 (MQ=255)                                                                                                                          aGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCCCACTACCAGCGGCGCTACGGAGTTTCACTTCTGAGTTCGGCATGGCGCCAGGTGGGACAACCGCGCGACGGCGGCCAGGc                  >  1:463587/1‑143 (MQ=14)                                                                                                                                        gCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCCTCGGCGCTACGGCGCTTCTCTTCTGAGTTCGGCATGGGGGCAGTTGGGACCACCGCGCTACGCCCGCCAGGCAACTTCTGttttct    >  2:672702/1‑141 (MQ=11)                                                                                                                                          tAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCCGGCACCTTCTGTTTTATCa  >  1:49491/1‑143 (MQ=9)                                                                                                                                               |                                                                                                                                          CGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCA  >  NC_000913/3423521‑3423800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.