| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 40 [0] | [0] 39 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 33 (0.700) | 30/268 | 0.6 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
GACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCC > NC_000913/3909943‑3910225 | aattaacagcccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagg > 2:426694‑M2/143‑143 (MQ=255) attaacagcccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccaggc < 1:371994‑M2/2‑1 (MQ=255) gcccgctacccgccagtgctttcgccagtcccccaccgtccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtctataccgcgagtgatggtgtacattaaaatccagatcagccagGCGCAAGCt < 1:155434‑M2/9‑1 (MQ=255) cgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgatacggcgagcgatggtggacagtaaaatccagatcagccagGCGCAAGCgcag > 1:218705‑M2/132‑143 (MQ=255) ccgccagagcgttcgccagaccaccaccttccgtcttgggcggcggcgccatttcagtgaacagcgccagcgacataccgtcgataccgcgcgtgatggtggacattaaaatccagatcagccagGCGCACGCGCAGTCACGa > 1:192678‑M2/126‑143 (MQ=255) cgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatcaagatcagccagACGCAAGCTCAGTCAGGaa > 1:544857‑M2/125‑143 (MQ=255) ttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgagcagcgccagcgacataccgtcgataccgcgagtgatggtggaccttaaaatccagatcagccagGCTCAAGCTCAGTCAGGAACAGGGCGATa > 2:460909‑M2/115‑143 (MQ=255) cagaccaccaccttccgtattgggcggcggcgtcatttcagtgcacagcgccagcgacatacggtcgataccgcgagtgatggtggacattaagatccagatcagccagGCGAGAGATCAGTCCGGAGCAGGGACATGCCGaa > 1:246196‑M2/110‑143 (MQ=255) ccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAcc < 2:351291‑M2/41‑1 (MQ=255) cggcttcatttcactgaaacgggccagcgacataccgtctataccgcgagtgatggtggacattaaaagccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAgcgc < 1:59259‑M2/61‑1 (MQ=255) gtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATCACGAAACTCACCGGGACGGCGATCAGCAGCGCGATa > 1:29419‑M2/79‑143 (MQ=255) gtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGacggggaacagcagcgccaccaacgcaggc > 1:4211‑M2/70‑130 (MQ=255) tgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATACACGAAGGCa > 2:485751‑M2/69‑143 (MQ=255) aacagcgccagcgacataccgtcgataccgcgagtgatgctggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGCTAAACGAAGTCAcc > 1:703554‑M2/67‑143 (MQ=255) agcgccagcgacataccgtcgataccgcgagtgatggtggacattcaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGCGACGGCGATCAGCAGCGCGATACACGAAGTCACCAAc > 1:67313‑M2/64‑143 (MQ=255) gcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACg > 1:451694‑M2/63‑143 (MQ=255) gacacaccgtcgataccgcgagtgagggtggacagtaaaatccagatcagccagGCGCAAGCGCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAg < 2:53806‑M2/89‑1 (MQ=255) ataccgtcgatcccgcgagtcatcgtgcacatcaaaatccagttttgccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATc < 2:30115‑M2/92‑1 (MQ=255) ccggcggggccgcgggggatggcgggcattaaaagccagatcagcccgGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGc < 2:50579‑M2/95‑1 (MQ=255) gtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCAc > 2:2916‑M2/47‑143 (MQ=255) ataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGACCAGCAGCGCGATAAACGCAGACCCCAACGTACCGCACAACGGCACCAgc > 1:246177‑M2/43‑143 (MQ=255) cgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCGACGTACCGTAGATCGGCACCAGCGccc > 1:221364‑M2/39‑143 (MQ=255) cgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGGCCCg > 2:264819‑M2/37‑143 (MQ=255) cagcgatggtgcacatcaaaacccggaccagcccgGCGCAAGCTCAGCCAGGAACAGGGCGATACCGATCCTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGt < 1:193072‑M2/108‑1 (MQ=255) tgatggtggacgtgaaaatccagagcggccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAGCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGa < 1:798515‑M2/111‑1 (MQ=255) tgataatagacattaaaatcaaaaaaagacagGCTCAAGATCAGTCAGGAACAGGCAGATACCGAAACTCACCGGGACGGCGATCATCAGCGCGATAAACAAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGa < 1:254899‑M2/111‑1 (MQ=255) gtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCg < 2:719922‑M2/116‑1 (MQ=255) ggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGTGCGATACCGCAACTCACCAAGACAGCAAACAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACAAGCGACCCGTAGATATCGtt > 2:53882‑M2/26‑143 (MQ=255) acattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCg > 2:261887‑M2/24‑143 (MQ=255) attaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGt > 2:635918‑M2/22‑143 (MQ=255) ccccgaccacctacgcgcAACCGCGGTCAGGAACAGGGCGATACCGAAACTCCCCGGGACGGCGATCACCAGCCCGATAAACGTAGTCACCAACGTACCCTAGATCGGCACCAGCGCTCCGTAGATATCGTTCGGTGCATccc < 1:674103/129‑1 (MQ=255) ccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCACCGTACAATAGAACGGCACCAGAGCCCCGTAGATAACGCCCGATGCAGCCCa > 1:374556‑M2/14‑143 (MQ=255) agatcagccggGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCAct < 1:347780‑M2/132‑1 (MQ=255) agatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCAct < 2:680798‑M2/132‑1 (MQ=255) gggcagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACGCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTg < 2:726569‑M2/137‑1 (MQ=255) agccagGCGCGGCCTCAGCCGCGAGCAGGGCGATACCGAAACTCCCCGGGACGGCGATCAGCAGCGCGATAAACTAAGTCACCAACGCACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTg < 1:489884‑M2/137‑1 (MQ=255) ccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGTAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGGAGATATCGTTCGGTGCATCCCACGCTTTGGt > 2:722244‑M2/5‑143 (MQ=255) cagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACGCTTTGGTc > 2:510154‑M2/4‑143 (MQ=255) agGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTcc > 2:359375‑M2/3‑143 (MQ=255) | GACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCC > NC_000913/3909943‑3910225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |