New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3943623NA (NA)7 (0.150) 6/268 5.7 17.0% intergenic (+114/‑80) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 4037456 36 (0.730)intergenic (+122/‑62) alaT/rrlA tRNA‑Ala/23S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTAC  >  NC_000913/4037333‑4037537
                                                                                                                           |                                                                                 
cagttcgtaagggATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCGCTCAAATTTTc                                                                <  2:749763/131‑1 (MQ=1)
       gTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTGACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTACGTGAGTCTCTAAAATTTTCGCAacac                                                         >  1:214683/1‑143 (MQ=9)
       gTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac                                                         <  2:324512/143‑1 (MQ=31)
        tAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCACCACg                                                        >  2:819343/1‑143 (MQ=14)
        tAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACg                                                        >  2:837198/1‑143 (MQ=17)
                 aataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt                                               <  2:540891/143‑1 (MQ=35)
                 aataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt                                               <  2:116348/143‑1 (MQ=35)
                  ataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCCACACGATGATGAATc                                              >  2:678404/1‑143 (MQ=21)
                   taaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGCGGAAtag                                             >  1:46938/1‑141 (MQ=12)
                   taaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg                                             >  2:16357/1‑143 (MQ=34)
                   taaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg                                             >  2:107373/1‑143 (MQ=34)
                     aaagaTACTTCAGAGGGTACAGGCAAAGGTGCACTTCGAATTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaa                                           <  1:556537/143‑1 (MQ=11)
                     aaaagTGCTTCAGAGGGTACCTGCAAAGGTTCACTGCGAAGGTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaa                                           <  1:245419/143‑1 (MQ=255)
                      aaaaTACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaa                                          <  2:1671/143‑1 (MQ=38)
                       aaaTACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaag                                         <  1:232485/143‑1 (MQ=38)
                          tACTTCACAGTTTACCTGCAAAGCTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaaa                                      <  2:694969/143‑1 (MQ=255)
                          gaCTGCAGAGTGTAGCTGCAAAGGTGCACTGCGAAGTTTATCTCTTTAAGAGTCGGGATCAAGCTGAAAAGTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCGCTCAAATTTTCGCAACACGATGATGAATCgaaagaaa                                      <  1:256116/142‑1 (MQ=11)
                            cTTCAGAGTGTACCTGCAAAGGTTCACTGCGACGCTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCACAATTTCGCAACACAATGATGAGTCGACAGAACCa                                    >  1:319886/1‑143 (MQ=11)
                             ttCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACAt                                   >  1:25210/1‑143 (MQ=38)
                              tCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTCCGCAACCCGATGATGAATCGAAAGCAACATc                                  <  2:800486/143‑1 (MQ=255)
                                          tGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGACCGAAACATCTTCGGGTTGTGa                      >  2:392542/1‑143 (MQ=255)
                                          tGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGa                      <  2:544758/143‑1 (MQ=39)
                                          tGCAAAGGGTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAACTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGa                      <  2:611967/143‑1 (MQ=255)
                                           gcgaaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCGAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTAGTGAGTCTCTCAAATTTTCGCTCGTCGGTGATGAATCGAAAGCTACTTCTGCTTGTTGTGAg                     <  1:388229/140‑1 (MQ=11)
                                            cAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAgg                    <  1:272083/143‑1 (MQ=38)
                                                 gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAg               >  2:376438/1‑143 (MQ=37)
                                                 gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTGAAg               >  1:812375/1‑143 (MQ=38)
                                                 gTTCACTGCGAAGTTTTGCTCTTTAAAAATCCGCATTAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAg               <  1:833378/143‑1 (MQ=255)
                                                     aCTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGAc           <  2:473936/143‑1 (MQ=38)
                                                       tgtgAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACCGAACAACGAAAGTTGTTCGTGAGTCGCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTa         >  1:824797/4‑143 (MQ=16)
                                                       tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTa         >  2:652407/1‑143 (MQ=35)
                                                       tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTa         >  2:172308/1‑143 (MQ=35)
                                                       tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTa         >  2:857684/1‑143 (MQ=35)
                                                         cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAg       >  1:73594/1‑143 (MQ=34)
                                                         agAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAGTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAAATTTCGCAACACGAGGATGAATCGGAAGAAGCATCTTAGGGTTGTGAGGTTCAGCGACTCAg       >  1:781046/2‑143 (MQ=11)
                                                              ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGACAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTac  >  2:29142/1‑143 (MQ=11)
                                                                                                                           |                                                                                 
CATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTAC  >  NC_000913/4037333‑4037537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.