Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,909,311 Δ774 bp [pstA][pstC] [pstA], [pstC]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3909311 3910084 774 38 [0] [0] 37 [pstA]–[pstC] [pstA], [pstC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39093100 (0.000)37 (0.750) 30/270 0.6 100% coding (129/891 nt) pstA phosphate ABC transporter permease
?NC_000913 3910085 = 0 (0.000)coding (313/960 nt) pstC phosphate ABC transporter permease

ACAAAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3909165‑3909310
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGC  >  NC_000913/3910085‑3910208
                                                                                                                                                                                                                                                                              
ACAAAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATCAAAATCCAGATCAGC                                                                                                                                 >  2:28305/1‑143
   AAATTGCCAGCCCGCTACCCGCCAGAGCGTTCGCCGTACCGCCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG                                                                                                                              <  2:523432/143‑1
              tCGCTACCCGCCGGGGCGTTCGCCAGACCTCCACCCTCCGTATGGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCA                                                                                                                   <  2:18522/142‑1
                  TACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAAGCCAGATCAGCCAGGCGCAAGCTCAGTCg                                                                                                               >  1:709390/1‑142
                       GCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAAC                                                                                                          >  1:136225/1‑143
                        CCAGGGCGTTCGCCAGCCCACCACCTTCCGTATCGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACA                                                                                                         <  2:571108/143‑1
                            AGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTAGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGC                                                                                                     >  1:177989/1‑143
                              CGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGA                                                                                                   <  1:749181/143‑1
                                     CAGCCCACCATCCTCCGTATTGGGCGGCGGCGTCACGGCAGTGAACAGCGCCAGCGACCTACCGTCGATACCGCGAGTGATCGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGACGATACCGAA                                                                                            <  2:448651/143‑1
                                     CAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGG                                                                                                      >  2:62032/1‑133
                                     CAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGG                                                                                                      <  1:62032/133‑1
                                       cagCACCGCCTTCCGTATGGGGCGGCGCCGCCACTTCAGTGAACAGCGCCAGCGACATCCCGTGGATACCGCGAGTGATGGTGGACATTAAAATCCATATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGACAC                                                                                          <  1:366892/140‑1
                                                CTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGA                                                                                 >  1:536161/1‑143
                                                      gagTGGGCGGCGACGGAAGTTCAGTGAACGGCGCCAGCGACATACCGTCGACACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGA                                                                           <  1:878495/140‑1
                                                      TATTGCGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATTGTGTACATTATAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGA                                                                           <  1:447853/143‑1
                                                             CGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAG                                                                    >  1:297526/1‑143
                                                               GCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCG                                                                  <  1:721482/143‑1
                                                                      catttggggggACAGCGCCCGCGACATACCGGCGATACCGCGAGTGATGGTGGACAGTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAA                                                           <  2:467026/132‑1
                                                                          TCAGTGGACTGCGCCAGAGAGATAGGGTCGATACCGAGAGTGATTGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAA                                                       <  2:318403/143‑1
                                                                             GTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATGAGCAGCGCGACAAACGAAGTC                                                    >  2:786944/1‑143
                                                                                AACAGCGCCAGCGACATACGGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACC                                                 <  1:495887/143‑1
                                                                                AACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAACTCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGCCGGCGCTCCGCAGCGCGAacaccgcaatcacc                                                 >  2:477952/1‑129
                                                                                  gcaCGCCAGCGCCTTAGCGTCGCTACCGGGGGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGGTCAGTCAGGAACAGGGCTATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAA                                               <  2:762033/140‑1
                                                                                    GCGCCAGCGACAGACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACG                                             <  2:34100/143‑1
                                                                                        aAGCGACATACCGTCGATACAGCGAGGGATGGTGGACAGTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACC                                         <  1:810648/142‑1
                                                                                        CAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACC                                         >  1:831780/1‑143
                                                                                           CGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACGGGGACGGCGATCAGCGGCGAGACAAAAGAAGACACCAACGTACGGTA                                      >  2:366751/1‑143
                                                                                               ATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACCGGTCGGTACCGAAACTCACCGGGACGACGATCAGCAGAGGGCTCAACGACGTCACCAACGTACCGTAGAgc                                  >  1:563231/1‑141
                                                                                                gACCGTCGAGACCGCGAGTGATGGTGGACAAGAAAATCGAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCG                                 <  1:294649/142‑1
                                                                                                     TCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGAGCGGCACC                            >  1:542569/1‑143
                                                                                                        ATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGC                         >  1:534311/1‑143
                                                                                                        ATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAACAGCGCGACAAACGAAGTCACCAACGTACGCTAGCTCGGCACCAGC                         >  2:416693/1‑143
                                                                                                                agggctgttgaACATTAAAGGCCAGAGCAGCCAGGCGCAAGCTCAGTCAGGATCAGGGCGATACCGAAACTCGCCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTA                 <  1:698106/132‑1
                                                                                                                 gaGATGGTCGACACTAAAAGCCCGGCAGGCCAGGCGCAAGCGGAGTCAGGAACAGGGCGAGACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAG                <  2:135688/141‑1
                                                                                                                       GTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCG          >  2:719445/1‑143
                                                                                                                       GTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGACAAACGCAGTCACCAACGTACCGTAGCTCGGCACCAGCGCCCCGGAGATATCG          >  2:719451/1‑143
                                                                                                                             atcatgacCCACATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGT    <  1:159888/135‑1
                                                                                                                             ATTAAACTCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAGCTCACCGAGCAGGCTGTGTTCAGCGCGAGAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGT    <  1:903679/143‑1
                                                                                                                               TAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGACACCAGCGCCCCGTAGCTATCGTGCGGCGC  >  1:587969/1‑143
                                                                                                                                                                                                                                                                              
ACAAAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3909165‑3909310
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGC  >  NC_000913/3910085‑3910208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.