New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2884483 =55 (1.070)3 (0.070) 3/248 7.3 5.8% intergenic (‑347/+68) casA/ygcB CRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
?NC_000913 2884501 = 49 (1.090)intergenic (‑365/+50) casA/ygcB CRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAATCTGCAAGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTA  >  NC_000913/2884343‑2884620
                                                                                                                                            |                                                                                                                                          
aaaTCTGCAAGTGATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTcc                                                                                                                                         <  1:890265/143‑1 (MQ=255)
        aaGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTaa                                                                                                                                 <  2:897301/143‑1 (MQ=255)
          gTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGt                                                                                                                               >  1:99705/1‑143 (MQ=255)
            tATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAg                                                                                                                             <  1:95004/143‑1 (MQ=255)
             aTTCGTTTTAATAATAAAGAAACTTTTAGTTATAATAATTATCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAgg                                                                                                                            <  1:59026/143‑1 (MQ=255)
                  ttttATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGaagg                                                                                                                       <  1:15596/143‑4 (MQ=255)
                  ttttATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATaa                                                                                                                       >  2:81976/1‑143 (MQ=255)
                        tattaAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCATCCCTACTTAAGTAGGGATAAACCGtt                                                                                                                 <  2:900674/143‑1 (MQ=255)
                              aGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGt                                                                                                           <  2:655143/143‑1 (MQ=255)
                               gAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGACTATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTc                                                                                                          <  2:447280/143‑1 (MQ=255)
                                aaaCTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAAGCTCATACCGGGAAATTAACAGAAGCTGTACATTGTGCACCTTCCCTACTTAAGTAGGCATACACCCTTATCAGTCt                                                                                                         >  1:203709/1‑143 (MQ=255)
                                 aaCTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGCAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCtt                                                                                                        <  2:885797/143‑1 (MQ=255)
                                  aCTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCtta                                                                                                       <  1:696325/143‑1 (MQ=255)
                                  aCTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCtta                                                                                                       >  1:563965/1‑143 (MQ=255)
                                   cTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCttat                                                                                                      <  1:603701/143‑1 (MQ=255)
                                   cTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCttat                                                                                                      >  2:220969/1‑143 (MQ=255)
                                    ttttAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCttatt                                                                                                     >  1:581796/1‑143 (MQ=255)
                                    ttttAGTTACAAAAATTACACTGTATTTTATTACATAAAATATTCATACAGTGAATATAAAATCTCATACCAGGAAATTAAAAGAAGATGTACATTGTGTGCCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCttatt                                                                                                     <  2:481281/143‑1 (MQ=255)
                                    tttgAGTTATAATAATGACCATGAAGTTTATTACATAAAATATTCAGACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCttatt                                                                                                     <  2:46813/143‑1 (MQ=255)
                                       tAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATc                                                                                                  >  1:43383/1‑143 (MQ=255)
                                            ataataATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTCTTGGCCTTATTATCGTCAt                                                                                             >  2:123511/1‑143 (MQ=255)
                                               ataatTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGa                                                                                          <  2:48685/143‑1 (MQ=255)
                                                taatTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGAt                                                                                         <  1:107601/143‑1 (MQ=255)
                                                taatTACCATGAAATTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGAt                                                                                         <  1:103631/143‑1 (MQ=255)
                                                        aggAATTTTATTACATAAAATATGCATACTGTGAATATAAAACCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCa                                                                                 <  1:761365/141‑1 (MQ=255)
                                                        aTGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAGATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCACATTGGGGGCATTGATAACAATCa                                                                                 >  1:332332/1‑143 (MQ=255)
                                                        aTGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAGCAATCa                                                                                 >  1:351187/1‑143 (MQ=255)
                                                          gAATTTTATTAAATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCAtt                                                                               <  2:686719/143‑1 (MQ=255)
                                                           aaTTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATACCCATCATTc                                                                              >  1:184482/1‑143 (MQ=255)
                                                                       tAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTAttt                                                                  >  1:174060/1‑143 (MQ=255)
                                                                        aaaaTATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCACGAAGTTATTTg                                                                 >  1:461139/1‑143 (MQ=255)
                                                                        aaaaTATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCATCATTGATAACAATCATTCCCGAAGTTCTTTg                                                                 >  2:94856/1‑143 (MQ=255)
                                                                                  tACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAg                                                       <  2:437973/143‑1 (MQ=255)
                                                                                  tACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACAGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAg                                                       >  2:133982/1‑143 (MQ=255)
                                                                                     tgtgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACACTCATTCCCGAAGTTATTTGGGATTTGCAGGGa                                                    <  2:472777/143‑1 (MQ=255)
                                                                                      gtgGATATCAACTCTCCTACCGGGAAATTAAAAGAAGATGTGGGGTGTGACCTTCAGGAACACGAGTATGGATGCGCCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGAt                                                   <  1:417197/143‑1 (MQ=255)
                                                                                         aaTATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGAc                                                >  2:519711/1‑143 (MQ=255)
                                                                                            ataAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGActct                                             <  2:314024/143‑1 (MQ=255)
                                                                                                  tctcATACCGGGAAATTAAAAGAAGATGTCCATTGCGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGCCTTATTATCGTCATTGATAACAATCATTCCCGCAGCTATTTGGGACTTGCAGCCCTGActctcgcccc                                       >  2:154208/1‑137 (MQ=255)
                                                                                                  tctcATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCAt                                       <  1:106697/143‑1 (MQ=255)
                                                                                                       tACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCtt                                  >  1:708055/1‑143 (MQ=255)
                                                                                                       tACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCtt                                  >  1:708054/1‑143 (MQ=255)
                                                                                                       tACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGCATTTGCAGGGCTGACCCTCGTCATCCCtt                                  >  2:787321/1‑143 (MQ=255)
                                                                                                           gggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTGAGTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATc                              <  2:542326/143‑1 (MQ=255)
                                                                                                             gAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                            <  1:840345/143‑1 (MQ=255)
                                                                                                             gAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                            <  1:81976/143‑1 (MQ=255)
                                                                                                             gAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                            <  1:365541/143‑1 (MQ=255)
                                                                                                                   aaaaGAAGATGTACATTTTTCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTTGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGTGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGtat                      <  2:836099/143‑1 (MQ=255)
                                                                                                                    aaaGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGtata                     <  1:865797/143‑1 (MQ=255)
                                                                                                                      agaagaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAgg                   <  1:700452/143‑1 (MQ=255)
                                                                                                                       gatgaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTCTTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGTCTCTGGTCATCCCTTCATCCCCTGTATAGGt                  <  1:113318/140‑1 (MQ=255)
                                                                                                                            tGTACATTGTGCACCTTCCCTACTTAAGTAGGGATCAAGCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGtaataa             <  1:166213/143‑1 (MQ=255)
                                                                                                                                    gtgCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGGCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTGTGGTCATCCCTTCATCCCCTGTGTAGGTAATAACAATACTg     >  1:541235/1‑143 (MQ=255)
                                                                                                                                       cACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATGACAATCATTCCCGAAGTTATTTGGGATTGGCAGTGATGACTCTGGTCATCCCTTCATCCCCTGTATAGTGAGTAACAATACGGttg  >  1:709965/1‑142 (MQ=255)
                                                                                                                                       cACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTa  >  1:578370/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                          
AAATCTGCAAGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTA  >  NC_000913/2884343‑2884620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.