| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,858 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815858 | 3815939 | 82 | 47 [0] | [0] 47 | [rph]–[rph] | [rph], [rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815857 | 0 (0.000) | 47 (0.980) | 40/264 | 0.1 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| ? | NC_000913 | 3815940 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH | |||||
CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATC > NC_000913/3815717‑3815979 | cacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGCCCCCCCCCTCTCCTTAAGGGTCAGTTAGCCAGCGCCGCCTTCTGCcg > 1:413238‑M1/1‑141 (MQ=255)cacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcg > 1:724253‑M1/1‑141 (MQ=255) tacgtgctaagcGCAACTTCGATCAACTGGCGCTGATATGATTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc < 2:235602‑M1/139‑7 (MQ=255) gttggtagccgcgaatgcaataCAGTGGCGCTGATATGCGTTCATGCCTTCGCTCCTCATCTTACTTTACTACAGACAAAAAAGAGGCGACTCATCCGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccct < 2:693230‑M1/134‑9 (MQ=255) tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcact > 1:846809‑M1/1‑130 (MQ=255) aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACCAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATAAGTTTGCCAGCGACGCCTTCTGCcgtcccctgcacttc > 1:483462‑M1/1‑128 (MQ=255) aaTTCAATAAACTCGCGCTGATATGGTTTCATGCCTTCGCACCTCATCTTACTATTCTACCCACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAACCAGTCTGCCAGCGCCGCCTTCTGCcgccccccgcacttcaatgat < 2:214188‑M1/143‑22 (MQ=255) aTTCAATAAACTCGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg < 1:477110‑M1/143‑23 (MQ=255) aTAAACTGGCGCTGATATGGTTTCATGCCGTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc < 1:447629‑M1/143‑28 (MQ=255) cTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccccggcacatcaatcatgcgcccgccctcggtca > 2:220021‑M1/1‑105 (MQ=255) gaatatggTTGCGATCCTTCGCTCCCCATCTTACTTTTCTACAGACAAGAAAAGGGCGACTCATCAGTCGCCTTAAATATCCGTTTGTCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat < 2:789130‑M1/141‑40 (MQ=255) atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTATACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttctgtcatca > 2:123254‑M1/1‑102 (MQ=255) ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactac < 2:868037‑M1/143‑46 (MQ=255) gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAACAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg < 1:757536‑M1/143‑47 (MQ=255) ttgcatgCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt < 1:746251‑M1/140‑48 (MQ=255) tcgtgccGTCGCTCCTCATCTTACTTGTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc < 1:392808‑M1/140‑50 (MQ=255) tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgggcccgtcttcggtcatcactccgttc > 1:597386‑M1/1‑94 (MQ=255) ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcagttcggtgtc > 1:4117‑M1/1‑83 (MQ=255) tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCGTAAAAATCAGTTTGCCAGCGCCGCCTTCTGAcgacccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgttggtcgct > 1:514760‑M1/1‑82 (MQ=255) ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactccgttcatgtcggtctctgcggcaga > 1:299026‑M1/1‑74 (MQ=255) ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtct > 1:83177‑M1/1‑70 (MQ=255) ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtccctgcggcagagcct > 2:139472‑M1/1‑70 (MQ=255) cTACAGACAATTAAATGGCTACTCATCAGTCGCCTTAAAAATCAGGTTGCCAGCGCCGCCTACTGCagttcccggcagttcaatgctgcgcgcgtcttctgtcatcactacgttcatgtcggtctctgcggcagagtcttcaa < 1:83931‑M1/143‑78 (MQ=255) cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa < 1:421397‑M1/143‑78 (MQ=255) tACAGGCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcgggctcttcgccagggccttcaac > 2:235365‑M1/1‑65 (MQ=255) tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcaggtcggtctctgcggtagagtcttcagc > 1:92348‑M1/1‑65 (MQ=255) aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacg > 1:113925‑M1/1‑64 (MQ=255) aaaagGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga < 2:768167‑M1/143‑89 (MQ=255) aaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttaaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat < 1:86244‑M1/143‑90 (MQ=255) aaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCGGCcgtcccctgcatttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc < 1:858276‑M1/143‑91 (MQ=255) aaGGCGCCCCACCAGTCGCCGTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcggtctctgcggcagagtcttcaacgtattccagatcg < 2:499396‑M1/143‑92 (MQ=255) gCGACTCATCAGTCGTCTTAAAGAGCTGGTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccttcttcggtcatgactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaa < 2:415783‑M1/143‑95 (MQ=255) gACGCAGCAGTCGCATTAAAAATGAGTTGGCCCGCGCCGCCTCCTGCcgtcccctgcacttcaatgatgcgcacgtcatcggtcagcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaac < 1:340178‑M1/143‑97 (MQ=255) cctgatcaggcgCGTGAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactgcaatgatgcgcccgtcttcggtcagcactacgttcatgtcggtctctgcggcagggtcttcaacgtattccagatcgcaaacc < 2:447776‑M1/139‑98 (MQ=255) cTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcgctacgttcatgtcggtctctgcggccgagtcttcaacgtattcgcgatcgcacacgg > 1:180942‑M1/1‑45 (MQ=255) atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactccgttcatgtcggtctctgcggccgagtcttcaacgtattccagagcgcaaaccgctg > 1:27649‑M1/1‑42 (MQ=255) atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctt > 1:734337‑M1/1‑42 (MQ=255) gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcacgtcggtctctgcgccagagtcttcaacggattccagctcgcaaaccgctacgcc > 2:448715‑M1/1‑38 (MQ=255) tCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactgcaatggtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccg < 1:33285‑M1/143‑107 (MQ=255) tctgaaaaatcagTTTGCGAGCGCCGTCTTCGGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc < 1:682088‑M1/139‑110 (MQ=255) ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac > 1:170425‑M1/1‑32 (MQ=255) ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatacgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtattcaacgtagtccagatcgcaaaccgcttcgcaggtcac > 1:274264‑M1/1‑32 (MQ=255) aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaa < 1:289650‑M1/143‑114 (MQ=255) aTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgccaaccgcttcgccgttcacagttcc > 1:885164‑M1/1‑26 (MQ=255) aTCAGTTTGCCAGCGCCGACTTCTGCagtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcgtcaacgtattccagatcgcaaaccgcatcgacgttcacaagtcc > 2:20827‑M1/1‑26 (MQ=255) agttgtccagggccGCCGTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac < 2:243563‑M1/137‑121 (MQ=255) tttGCCAACGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtgcacaagtccgacag > 1:532294‑M1/1‑21 (MQ=255) | CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATC > NC_000913/3815717‑3815979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |