New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =8 (0.160)38 (0.830) 33/252 0.3 80.8% coding (290/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 1209619 = 11 (0.240)pseudogene (1/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG  >  NC_000913/1209479‑1209757
                                                                                                                                            |                                                                                                                                          
agatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacccaCGt                                                                                                                                          >  1:192723‑M2/141‑143 (MQ=255)
  gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCGTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCGAACCGACGttt                                                                                                                                        >  1:388910/1‑143 (MQ=255)
    gcttttgcggcattccaccaccactgaagtactactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt                                                                                                                                      <  1:564237‑M2/7‑1 (MQ=255)
        ttgcggcattccacccccactgaatgattactgattgcgcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaa                                                                                                                                  <  1:614300‑M2/11‑1 (MQ=255)
           cggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgcgttttgctccttctccccaccccccgtttcttctcacg                                                                                                                               >  1:231327‑M2/130‑134 (MQ=255)
            ggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgagtccttgataggcctcgtctgcattgagttttgctccttctcccaaaccaaCGTTTATGAACATga                                                                                                                              >  1:416876‑M2/129‑143 (MQ=255)
             gcatcccacccccactgaatgattactgattgctcaataccaccaaccataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa                                                                                                                             <  1:427241‑M2/16‑1 (MQ=255)
              ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCACCGCATATGaaacttgag                                                                                                                            >  2:343075/1‑137 (MQ=255)
                ttcccacactactaaattattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaagaa                                                                                                                          <  2:582264‑M2/19‑1 (MQ=255)
                aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCACCGTTTATGAAACTgaagaa                                                                                                                          >  1:886868/1‑143 (MQ=255)
                    acccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATaa                                                                                                                      <  2:380627‑M2/23‑1 (MQ=255)
                    acccccactcaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatttagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATaa                                                                                                                      <  1:153256‑M2/23‑1 (MQ=255)
                     cccccactgaatgattactgattgctcaatacgaccaatcatgaccggtatcgcgatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc                                                                                                                     <  2:130455‑M2/24‑1 (MQ=255)
                      ccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGACATAACa                                                                                                                    >  1:534042‑M2/119‑143 (MQ=255)
                            tcttcAGCAGAAAAAGCGGCACCATTGCATTCCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                              <  1:525205/143‑1 (MQ=255)
                                   ttactgattgctcaataccaccaatcataaccggtatagctatgaaacaggtacgtcctaatgtagccgttgctgcatcgagttttgctcctcctaccaaaccaaCGTGTCTGACAACGCAGAAAtaacaagcaactagacaa                                                                                                       >  2:46801‑M2/106‑135 (MQ=255)
                                    tactgattgctcaataccaccaatcataaccggtatagctatgaaacaggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATCACAAGCAAATGGcatca                                                                                                      >  2:181326‑M2/105‑143 (MQ=255)
                                       tgattgctcaataccaccaatcataaccggtatagctatgaaacaggtgcttcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc                                                                                                   >  1:620943‑M2/102‑143 (MQ=255)
                                        tattgatcaagaccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc                                                                                                  <  2:287109‑M2/43‑1 (MQ=255)
                                                 acaccaccaatcataaccggtctagctatgaaaccggtgcgtcctaatgtagccggtgctgcattgagttctgctccttctcccaaaccaaCGTTTATGAACATGAAGACATAACAAGCAAACGGCATCCTTCCtgctttgcc                                                                                         >  2:256599‑M2/92‑140 (MQ=255)
                                                      accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                    >  1:605066‑M2/87‑143 (MQ=255)
                                                         tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAAACGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTGTGAAAATGAAGAAATAACACGCAAATGGCATAATTACGTCttttcgacgcggga                                                                                 >  1:894394/1‑133 (MQ=255)
                                                         acgcatcaccggtatagctatgaacccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa                                                                                 <  1:69233‑M2/60‑1 (MQ=255)
                                                         aatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa                                                                                 >  2:92795‑M2/84‑143 (MQ=255)
                                                          atcataaccggtatagctatgaaaccgctgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTCTATGAAAATGAAGAAATGACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt                                                                                <  2:681104‑M2/61‑1 (MQ=255)
                                                            cataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt                                                                              >  1:722454‑M2/81‑143 (MQ=255)
                                                                 ccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccatCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt                                                                         <  1:435200‑M2/68‑1 (MQ=255)
                                                                        tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCTATACCATTTTTTTTGTTATTTAAGAAATAACAAGCAAATGGCATCATACCTGCTTTTACCAGGGGGATTTAACATGCTTAtt                                                                  <  1:53137/143‑1 (MQ=255)
                                                                        agctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt                                                                  <  1:777297‑M2/75‑1 (MQ=255)
                                                                        agcgatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt                                                                  <  1:382533‑M2/75‑1 (MQ=255)
                                                                          acagAGTCGCCGAAGGCCACGGAACCGAGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                <  1:408722/140‑1 (MQ=255)
                                                                           tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAACTGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGCATTTAACATGCTTTTTAGc                                                               >  2:40197‑M2/66‑143 (MQ=255)
                                                                               gtggccttcagCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAACGGGAATTTAACATGCTTATTGGCTATg                                                           >  2:430713/11‑143 (MQ=255)
                                                                                     gtgcgtcctaaggtagccgttgctgcattgagttacgcgccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTGACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgcg                                                     <  2:186190‑M2/88‑1 (MQ=255)
                                                                                        cgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt                                                  >  1:21262‑M2/53‑143 (MQ=255)
                                                                                        cgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacaaaCGTATATGCAAATGAAGAAAGAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTGCGCGTAt                                                  >  1:341440‑M2/53‑143 (MQ=255)
                                                                                           cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGAGTATcaa                                               >  1:94387‑M2/50‑143 (MQ=255)
                                                                                           cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTCCGCGTATcaa                                               >  1:517081/1‑143 (MQ=255)
                                                                                             taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaaca                                             >  1:765098‑M2/48‑143 (MQ=255)
                                                                                               atgtagccggtgctgcattgagttttgctccttctaccaaaccgaCGTTTATGAAAATGGAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                           <  2:504897‑M2/98‑1 (MQ=255)
                                                                                                  tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                                        <  1:71149‑M2/101‑1 (MQ=255)
                                                                                                   agccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                                       <  1:14479‑M2/102‑1 (MQ=255)
                                                                                                    gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAACGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGAGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc                                      >  2:649380‑M2/41‑143 (MQ=255)
                                                                                                     ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa                                     <  1:154631‑M2/104‑1 (MQ=255)
                                                                                                         acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac                                 >  1:447245/1‑143 (MQ=255)
                                                                                                           ctgcattgagttttgctcctactcccagaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac                               <  2:416876‑M2/110‑1 (MQ=255)
                                                                                                                ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAACGACCAGAACACagaac                          >  2:423296‑M2/29‑141 (MQ=255)
                                                                                                                 gTAATGCAGAGCCTTCTCCCAAACCAGCGTTCATTTAAAGTAATATGTAGCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGTGATTTAACATGCTCATTTGCGATGTACGCGTATCAACACATGACGAGAACACAGATCt                         >  2:600089/1‑143 (MQ=255)
                                                                                                                        tgctccttctcccaaaccaaCGTTTATGAAAATGAAGACATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGTGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAACGACCAGACCTCAGATCTACaacca                  >  2:218542‑M2/21‑141 (MQ=255)
                                                                                                                             cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCtacagcgggttgc             >  1:802612‑M2/16‑137 (MQ=255)
                                                                                                                              ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTCTGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcg            >  2:761892‑M2/15‑143 (MQ=255)
                                                                                                                                   ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa       <  1:581229‑M2/134‑1 (MQ=255)
                                                                                                                                     aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACt     >  1:745809‑M2/8‑143 (MQ=255)
                                                                                                                                     aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAGGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACt     >  1:474903‑M2/8‑143 (MQ=255)
                                                                                                                                       accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgt   <  1:92795‑M2/138‑1 (MQ=255)
                                                                                                                                        ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgtg  >  1:54282‑M2/5‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                          
CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG  >  NC_000913/1209479‑1209757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.