New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3423663 =NA (NA)16 (0.310) 12/280 3.8 24.5% intergenic (‑10/+3) thrV/rrfD tRNA‑Thr/5S ribosomal RNA of rrnD operon
?NC_000913 = 4171802 50 (0.970)intergenic (+47/‑254) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
Rejected: Coverage evenness skew score above cutoff.

CCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAG  >  NC_000913/4171662‑4171919
                                                                                                                                            |                                                                                                                     
ccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGCCTGGGCCTTTCGTTTTATCt                                                                                                                     >  1:698922/1‑143 (MQ=25)
 caacttaCCCCATGTCTAACGCATAATTGAAACGCCGTAGCGCCGATTGTAGTGTGGGGTCTCCCCATGCGAGAGTATGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg                                                                                                                    <  1:907286/137‑1 (MQ=11)
 cACCTGGCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg                                                                                                                    <  1:405120/143‑1 (MQ=25)
  acttgcccccATGCCGAACTGTGAAGCGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTATGGAACTGCCAGGCATCATATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgt                                                                                                                   <  2:649389/137‑1 (MQ=11)
          ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCCAATAAAACGAAAGGCTCAGCCCACAAACTGGGCCTTTCGTTTTATCTTTTGTTTGTc                                                                                                           >  1:334728/1‑143 (MQ=11)
           cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg                                                                                                          <  1:638278/143‑1 (MQ=35)
                 gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGAGTGGGGTCTCCCCATGCGAGAGGCGGGCACGCCAAGGCATCAAATAAAACGAAAGGCTCAGTCGCAAGGCAGGGCCTTTCGAGTTATCTGTTGTTAGTccgggacg                                                                                                    >  2:907025/1‑136 (MQ=11)
                       agcgtggcaggggcGTAGCGCTGTGGGTGGTGTGGGGTCTCTCCGGGCGAGGGGGGGTAACTGCCAGGCCTCAAATAAAACGAGAGGCTTGGTCGAAAGACTGGGCCTTTCGTTTTAGCTGTTGTTTGTCGGTGAACGCtctc                                                                                              <  2:380823/130‑1 (MQ=2)
                       aGAAGTGACACGCCGTGGCGCCGAGGGTAGTGCGGGGTCGCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATATAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCtctc                                                                                              <  2:539466/143‑1 (MQ=11)
                         aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAACTAACACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAGCGCTCTCCt                                                                                            >  2:886130/1‑143 (MQ=255)
                         aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTccc                                                                                            >  2:458804/1‑142 (MQ=25)
                          aGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTg                                                                                           >  1:725016/1‑143 (MQ=35)
                              aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGCGAGCAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTACGTTTTATCGCTTGATTGTCGGTGAACGCTCTCCTGAGTa                                                                                       >  2:877921/1‑143 (MQ=11)
                              aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAGAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTa                                                                                       >  1:289777/1‑143 (MQ=25)
                                aCGCCGGAGCGCCGAAGGCGATGTTGGGTCGCCCCATGCGAGAGCAGGGAACTGCCAGGCATCTGTTAAATCGAAAGGCTGAGTCGAGAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAgg                                                                                     <  2:219169/143‑1 (MQ=11)
                                        gtgcCGATGGTAGAGTGGGGACTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATcc                                                                             <  1:608238/141‑1 (MQ=255)
                                                   aGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCAACAAATAACACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGCTTTATCTGATGTTAGTCGCCGCACGCTCTCCCGAGTAGCACAACACTGACGGGAgagc                                                                  >  2:63154/1‑140 (MQ=11)
                                                     tgtgGGGTCTCCCCATGGGAGAGTAGGGAACTGCAAGGCATCAAATAACACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAt                                                                <  1:77045/143‑1 (MQ=255)
                                                       tgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCTGAAGCGGAttt                                                              >  2:689311/1‑143 (MQ=21)
                                                       tgGCGTCTCACCATGAGTGAGTAGGGAACTGCCAGGCATCAAATAAAATGTGAGGGTGAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAttt                                                              <  2:216910/143‑1 (MQ=11)
                                                          ggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGaa                                                           <  1:754152/143‑1 (MQ=34)
                                                           gTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGTGCTGTTTTGAAc                                                          >  2:632794/1‑143 (MQ=255)
                                                           gTCCCCCCATCCGGGCGCAGGGAACGGAGAGGCATCAGATAAAACGGAGGGCTGAGTCGGGAGGCTGGGCGGGTCGTGTTAGCTGTTGTTTGTCGGTGAACGCTCTCCTGAGGAGGACAAATCCGCCGGGAGCGGATTTGAAc                                                          <  2:263599/143‑1 (MQ=0)
                                                              tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGtt                                                       <  1:759210/143‑1 (MQ=35)
                                                              tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGtt                                                       >  2:851225/1‑143 (MQ=35)
                                                              tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTAGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGtt                                                       >  1:470878/1‑143 (MQ=21)
                                                                cccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTTAACGTTgt                                                     >  1:545911/1‑142 (MQ=18)
                                                                cccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGAATGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAACCACCGGAAGCAGATATGAAccatac                                                     >  2:113699/1‑138 (MQ=11)
                                                                 ccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCg                                                    >  1:200490/1‑143 (MQ=32)
                                                                  cATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGCGTAGGACCAATCCGCCGGGAGCGGATTTGAACGTTGCGa                                                   >  2:38444/1‑143 (MQ=17)
                                                                   aTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGaa                                                  <  1:846940/143‑1 (MQ=32)
                                                                          agTCGGGAACTCCCAGGCATCAAATAAGACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACgg                                           <  1:359363/143‑1 (MQ=12)
                                                                                    tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAGATCCGCCGGGAGCGGGTTGGGACATTTCTAAGCGACGGCCCGGAGGGt                                 >  1:334967/1‑143 (MQ=11)
                                                                                    tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACCGCCCGGCGGGt                                 >  2:666264/1‑143 (MQ=17)
                                                                                     gCCAGGCAGCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTg                                <  1:154367/143‑1 (MQ=17)
                                                                                       cAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGGAGCAACGGCCCGGCGGGTgga                              >  1:515428/1‑142 (MQ=17)
                                                                                        agccATCAAATCAAAGGAAAGGGGCGGTCGAAAGACTGGGCCGTGCGGTGTAGGGGTGGTTTGTCGGTGAACGCTCGCCTGAGTAGGACAAATCCGCCGGGAGCGGAGTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCg                             <  2:716996/140‑1 (MQ=11)
                                                                                        aGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTGCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGCTTTGCACCTTGCGTAGCCACGGCCCCGAGCGTGGCg                             >  1:66754/1‑143 (MQ=11)
                                                                                          gCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAGCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCggg                           <  1:385020/143‑1 (MQ=17)
                                                                                               aagtAAACCGAACGGCTCAGTCGAAAGACTGGGTCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAATAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGa                      <  2:644214/140‑1 (MQ=11)
                                                                                               aaaTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATCTGAACGTTGCGGAGCCACGGCCCGGAGGGGGGCGGGCAggg                      >  2:781353/1‑142 (MQ=255)
                                                                                                aaTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACACATCCGTAGCGAACGGATTGGAACGTTGCGAACCAACGGCCCGGCGCGTGGCGCGCAGGAc                     >  1:659269/1‑143 (MQ=11)
                                                                                                aaTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAc                     >  2:758727/1‑143 (MQ=32)
                                                                                                 aTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGACCGTTGCGAAGCACCCGCCCGGAGGGGGGCGGGCAGGAcg                    >  2:372166/1‑143 (MQ=255)
                                                                                                    aaaCGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgccc                 <  1:883595/143‑1 (MQ=32)
                                                                                                     caCGAAAGGCTCAGTCGAAAGACTGGGCCTTGCGTTTTAGCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgcccg                <  1:10870/142‑1 (MQ=17)
                                                                                                          caGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATa           <  1:877921/142‑1 (MQ=17)
                                                                                                               tCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGGGGGACGCACGCCATAAACTg      >  2:860365/1‑143 (MQ=255)
                                                                                                                 aGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCAGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCCTaacgcgcc    >  2:597149/1‑137 (MQ=11)
                                                                                                                   tCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGCTTTGAACGTTGCGAAGCAACGGCCCGGGGGGTGGCGGGCAGGACGCCCGCCATACACTGCCAg  >  1:188477/1‑143 (MQ=12)
                                                                                                                                            |                                                                                                                     
CCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAG  >  NC_000913/4171662‑4171919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.