New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4606559 =NA (NA)3 (0.060) 3/270 7.8 NA noncoding (1/92 nt) REP351 (repetitive extragenic palindromic) element, contains 2 REP sequences REP351 (repetitive extragenic palindromic) element, contains 2 REP sequences
?NC_000913 4606591 = NA (NA)noncoding (33/92 nt) REP351 (repetitive extragenic palindromic) element, contains 2 REP sequences REP351 (repetitive extragenic palindromic) element, contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCG  >  NC_000913/4606451‑4606731
                                                                                                                                            |                                                                                                                                             
tGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGCAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGCTGCGACGCTGGCGCGTCTTATCTGGCCTa                                                                                                                                             >  1:599982/1‑143 (MQ=255)
     ttCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCGGGAGACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAg                                                                                                                                        >  1:496303/1‑143 (MQ=255)
      tCAGCGTTGCGTCAAGAGTTAAGTATCGAGAGAGGTGGAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGAGCAGGTGTGGTATGCATGCGGGGGCAGATGCCAGAGGCGACGCTGGCGCGTCTTATCTGGCCTACGAAgg                                                                                                                                       <  2:666318/143‑1 (MQ=255)
       cAGCTTTTCGTCAAGTGTTCTTTGTCGTCAGAAGCGTAATTGCTTGAAAAATTTCCATCAGCAAACTAGCTTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAggg                                                                                                                                      <  1:807388/143‑1 (MQ=37)
           ttttCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGCCTTATCTGGCCTACGAGGGGcgca                                                                                                                                  >  1:693954/1‑140 (MQ=255)
             ttCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTCTCTGGCCTACGAAGGGCTAACg                                                                                                                                >  2:34949/1‑143 (MQ=255)
             ttCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATATGGCCTACGAAGGGCTAACg                                                                                                                                >  1:105916/1‑143 (MQ=255)
                gTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGc                                                                                                                             >  1:196356/1‑143 (MQ=255)
                   aaTAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAgg                                                                                                                         >  2:872706/1‑143 (MQ=255)
                        ttAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTCTGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCCGGTTTTg                                                                                                                    >  2:281058/1‑143 (MQ=255)
                        ttAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGAATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCGAACGTGCAGGTtgtg                                                                                                                    >  2:286066/1‑143 (MQ=255)
                        ttAATTACCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTg                                                                                                                    <  2:709925/143‑1 (MQ=255)
                         tAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGt                                                                                                                   <  1:532861/143‑1 (MQ=255)
                             tATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACGAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGt                                                                                                               <  1:364439/143‑1 (MQ=255)
                                cGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGtcggtcgg                                                                                                            >  1:251699/1‑143 (MQ=255)
                                     gagGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTACCGTGCAGGTTTTGTAGGTCGGATAAg                                                                                                       >  2:170306/1‑143 (MQ=255)
                                      agGTGTAATTGCTGGAAAAATGTCCAGCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAgg                                                                                                      <  1:698205/143‑1 (MQ=255)
                                              ttGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcg                                                                                              >  1:733892/1‑143 (MQ=255)
                                              ttGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcg                                                                                              >  2:530534/1‑143 (MQ=255)
                                                ggtGGAATATTGTCGATCAGGAACTTAGGGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCTCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgcc                                                                                            <  2:237779/141‑1 (MQ=37)
                                                 cTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgccg                                                                                           >  2:507959/1‑143 (MQ=255)
                                                  tGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGGCGGTCGGATAACGCGTTCAcgccgc                                                                                          >  2:503585/1‑143 (MQ=255)
                                                     aaacaTGTCCATCAGGAAACTAGCGTGCAGGTGTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATc                                                                                       <  1:370077/143‑1 (MQ=255)
                                                               aTCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGTGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTa                                                                             >  1:273570/1‑143 (MQ=255)
                                                                tCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCCGGTGTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTAt                                                                            >  2:459528/1‑143 (MQ=255)
                                                                    gaaccccgCGGGCAGGTTTGGTACGTGTGCGGGGGCAGTTGCTGGAGGCGACGCTGGCGCGTCTTATCTGGCCGACGAACGGCTAACGTTCATGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCgg                                                                        <  1:192074/136‑1 (MQ=25)
                                                                    gAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCgg                                                                        >  1:905661/1‑143 (MQ=255)
                                                                       aCTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCCCGCCGCATCCGACACCGTATGCGGCga                                                                     >  2:221804/1‑143 (MQ=255)
                                                                        cTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCGGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCgag                                                                    <  1:659036/143‑1 (MQ=255)
                                                                         tAGCGTGCGGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCgaga                                                                   <  2:208359/143‑1 (MQ=255)
                                                                         tAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCgagg                                                                   >  1:511736/1‑142 (MQ=255)
                                                                          aGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGAt                                                                  >  1:37636/1‑143 (MQ=255)
                                                                           gCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTGTTGGAGGGCGGATAAGGCGTTCACGCCGCCTCCGACACGGTATCCGGCGAGATa                                                                 >  2:580899/1‑143 (MQ=39)
                                                                           gCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTAAGATTGCCAAACGTGAAGGGACCTCTACTTTTATAAGGCGTTCACGCCGCATGCGCCACCGTATTCGGCGAGGTa                                                                 >  2:882875/1‑143 (MQ=255)
                                                                                    tttGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGCTTTGTAGGTCGGATCAGGCGTTCACGCCGCATCCGGCACGGTAGTCGGCGAGATCATTacacta                                                        >  2:148067/1‑138 (MQ=39)
                                                                                                gcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGc                                            <  1:306470/143‑1 (MQ=255)
                                                                                                          atgccagaggcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAGCGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAAt                                  <  2:897757/143‑1 (MQ=255)
                                                                                                           tgccagctgcGACGCTGGCGCGTCTGATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATg                                 <  1:598093/143‑1 (MQ=255)
                                                                                                               agatgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGgcgc                             <  1:779848/143‑1 (MQ=255)
                                                                                                                  tgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCCTCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGAt                          >  1:677817/1‑143 (MQ=255)
                                                                                                                     gACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATaca                       >  2:226727/1‑143 (MQ=255)
                                                                                                                        gCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCt                    <  1:530194/143‑1 (MQ=255)
                                                                                                                            gcgcGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGACAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGaa                <  1:710229/143‑1 (MQ=255)
                                                                                                                                gTCTTATCTGGCCTACGAAGGGCTAACGGGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTGCTGCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAgcgc            <  2:694710/143‑1 (MQ=255)
                                                                                                                                   ttATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCt         >  1:317957/1‑143 (MQ=255)
                                                                                                                                     aTCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGatggatcataa       >  1:599780/1‑133 (MQ=255)
                                                                                                                                      tCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGAACAAACTTTAAAGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATCCACCTTGACGCGCCCCGtc      >  2:194657/1‑142 (MQ=255)
                                                                                                                                        tGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGTCTCGATACACATAGAAgcgcacaaagtg    >  1:88266/1‑135 (MQ=38)
                                                                                                                                        tGGCCCACGGAGGGCTAACGTGCAGGGTTTGTAGGTCGGGTAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAAGTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCCGTTTg    <  2:752279/143‑1 (MQ=39)
                                                                                                                                          gCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGTGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGCAGCGCCCTGCTTgcg  >  1:371682/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                             
TGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCG  >  NC_000913/4606451‑4606731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.