Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 46 [0] [1] 47 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)44 (0.900) 36/268 0.3 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257768‑258048
                                                                                                                                           |                                                                                                                                             
ttAAAAATTTGATAAATTTTGCTAACTTGGTAAAACAGGTGCATCAGAACAGGAGATAGTAATGACGTTACCGAGTGGACCCCCGAAGAGCAGATTGATCAACAAATGTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                            <  2:599365‑M1/143‑4 (MQ=255)
 taacgagttgctcactTGTGCCAATGTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg                                                                                                                                           <  1:26026‑M1/136‑5 (MQ=255)
           cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                                 <  1:821033‑M1/143‑15 (MQ=255)
            tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGGCCCCCCGCCGGACATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                >  2:396885‑M1/1‑128 (MQ=255)
            tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTCTATTCGTGAAGGCAagggcaaagataatc                                                                                                                                >  2:896261‑M1/1‑128 (MQ=255)
            tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                >  1:311517‑M1/1‑128 (MQ=255)
             aaaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATACTCGTGAAGGTAagtgcaaagataatcg                                                                                                                               >  1:186403‑M1/1‑127 (MQ=255)
                      cagtgtggtaaCACACTGACATCACAACAGAAAATAGCAATGACGGTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGTAGGTAagtgcaaagataatcgattcttttt                                                                                                                      <  1:414883‑M1/138‑26 (MQ=255)
                       catctggtaAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                     <  1:130227‑M1/139‑27 (MQ=255)
                       aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                     >  1:513049‑M1/1‑117 (MQ=255)
                         tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTTGACACCCGAAGAGCAGATTCATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                   <  2:584311‑M1/143‑29 (MQ=255)
                               aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatcatcgattctttttcgattttct                                                                                                             >  1:641941‑M1/1‑109 (MQ=255)
                               aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                             >  1:233593‑M1/1‑109 (MQ=255)
                                      ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                      >  2:830651‑M1/1‑102 (MQ=255)
                                        ccgtcacGACGGGAAATGGCACTCACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGTTAagtgcaaagataatcgattctttttcgattgtctggctgtatg                                                                                                    <  2:655961‑M1/140‑44 (MQ=255)
                                          aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATGGCTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttcgcttgactggcggcatgcg                                                                                                  >  1:731066‑M1/1‑98 (MQ=255)
                                              caacaaGACATAGCCAGGACGTTACAGACTGGACACCCGAAGAGCAGATTGATCAAAATTTTTACCGAACTCTGCCCGTATATTCGTGAAGGTAagtgcaaagataatcggttctttttcgattgtctggctgtatgcgtcaa                                                                                              <  2:272161‑M1/143‑50 (MQ=255)
                                              caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGCAGGTAagtgcaaagataatcgaccatacctcgatggcctggctgtatgcgtcac                                                                                              >  1:807349‑M1/1‑94 (MQ=255)
                                                     agaTAGCAATGACGGTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaa                                                                                       <  1:524632‑M1/143‑57 (MQ=255)
                                                       aTAGCAAGGACGTTACCGAGTGGACACCCAAAGTGCCGCTCTAGCAAAAAATTTACCGCACTAGGTCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                     <  1:413169‑M1/143‑59 (MQ=255)
                                                               gACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgagaccggcaccgg                                                                             >  2:116388‑M1/1‑77 (MQ=255)
                                                                 cGTTACCAAGTGCCCACCCGATGAGCAGATTGATCAAAAAATTGACCGCACTAGGCCCGTATATTAGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctttatgcgtcaacgtgaaaccggcaccggaa                                                                           <  2:137855‑M1/143‑69 (MQ=255)
                                                                        gAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg                                                                    >  1:593800‑M1/1‑68 (MQ=255)
                                                                        gAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATACGTGAAGGTAagtgcaaagatcatcgttccttgttcgattgtctagctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg                                                                    >  1:661027‑M1/1‑68 (MQ=255)
                                                                                        agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgatttctggggctggtg                                                    >  2:121370‑M1/1‑52 (MQ=255)
                                                                                          cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgga                                                  >  1:445250‑M1/1‑50 (MQ=255)
                                                                                           aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                 >  2:576539‑M1/1‑49 (MQ=255)
                                                                                           aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggaa                                                 >  2:576407‑M1/1‑49 (MQ=255)
                                                                                                 aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcatcggaagtgcgtgaattctggggctggtggatggagct                                           >  1:5711‑M1/1‑43 (MQ=255)
                                                                                                 aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgggtggaggt                                           >  1:385998‑M1/1‑43 (MQ=255)
                                                                                                  tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaccgtgaaaccggcaccggaagtgcgtgaattctgcggctgctggatggagctg                                          >  2:639484‑M1/1‑42 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggctggagctgga                                        >  2:621446‑M1/1‑40 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggg                                        >  2:288057‑M1/1‑40 (MQ=255)
                                                                                                      aaaaTTTACCGCACTAGGCCCATGTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaag                                      <  2:860266‑M1/143‑106 (MQ=255)
                                                                                                           ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag                                 <  1:505940‑M1/143‑111 (MQ=255)
                                                                                                             aCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagga                               >  1:395794‑M1/1‑31 (MQ=255)
                                                                                                                    tAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgaggctggtggatggagttggaagcgcaggagtcccgt                        >  2:71345‑M1/1‑24 (MQ=255)
                                                                                                                        cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                    <  1:791677‑M1/143‑124 (MQ=255)
                                                                                                                         ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                   <  1:623020‑M1/143‑125 (MQ=255)
                                                                                                                         ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggcgggtggatggagctggaagcgcaggaatcccgttttac                   >  2:482640‑M1/1‑19 (MQ=255)
                                                                                                                             ttattCGTGAAGGTAagtgcgaagatactcgatgctgtttcgattgtctggctgtatgcgtcaacgtgaaaccggcactggaagtgcgtgaattctggggctggtggatggagcttgaagcgcaggaatcccgttttacctac               <  2:655149‑M1/142‑129 (MQ=255)
                                                                                                                              tatTCGTGCTGGTAagtgcagcgataagcgatccctcttggagtgtctggctgtaggcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca              <  2:592795‑M1/143‑130 (MQ=255)
                                                                                                                                   gTGAAGGTAagtgcaaagataatcgattctgtttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatgctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac         <  1:763026‑M1/143‑135 (MQ=255)
                                                                                                                                   gTGAAGGTAagggcaaagataatcgatgctttttcgagtgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgtgaattctggggctggtggatggagctgtaagcgcaggaatcccgttttacctacagttac         <  2:739834‑M1/143‑135 (MQ=255)
                                                                                                                                       aGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgtgaattctggggctggtggatggcgctggaagcgcaggaatcccgttttacccacagttcccaat     >  2:6778‑M1/1‑5 (MQ=255)
                                                                                                                                          tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtgtg  >  1:486375‑M1/1‑2 (MQ=255)
                                                                                                                                           |                                                                                                                                             
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257768‑258048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: