| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 52 (0.980) | 43/282 | 0.2 | 96.3% | intergenic (+776/‑1) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 700597 = | 2 (0.040) | coding (998/1221 nt) | nagC | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor | |||||
GCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258534‑258675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGG > NC_000913/700597‑700737 GCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCA > 2:64549/1‑143 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAA < 2:624163/143‑1 tgCCGGCGGTGGTTTTGCCGTTAGGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTG < 2:266896/141‑1 GTCCGGCGGGGCTTTTGCGGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTG < 1:405075/143‑1 cggtCGGTGTTTTGTCCGAGACGCAACACCTCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAAGCAGTAAGTTGGCAGCATCACCAATAAGTTGAT < 2:65491/139‑1 CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATA < 2:78441/143‑1 CGGCGGTGCCGCTGCCGTTACCCACCAACCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAACTTGGCAGCCTCACCAATAAGTTGATA < 2:717743/143‑1 GTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGACACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTCGCCGCCTCACCAATAccgtgaaagaaat > 2:684868/1‑130 TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATG > 1:230227/1‑143 GCTTGTGGCGTTACGCACCACGCAGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGG < 1:121258/143‑1 TTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGAg > 2:592049/1‑142 TTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTT < 2:671723/143‑1 TTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGACAGCATCACCAATAAGTTGAGACCAACGGCGAacgttcc > 2:710089/1‑136 TACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTA < 2:920609/143‑1 ACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCACAAAAACACCATCATACACTAAATCAGTAAGCTGGCAGCACCCCCACACAGTTGATAGCAATGGCGATGGGTTTACCCAG > 2:430790/1‑143 ACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATG > 2:652867/1‑143 CCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGAC < 1:362086/143‑1 cttaatatGAGGTACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATAC < 1:297093/135‑1 ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGGTAGCAATGGCGATGGTTTTACCCAGATGACGACCGGCATACTCAA > 1:596237/1‑143 GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTAC > 1:730802/1‑143 ggaACAGCTGATAGAAACAGAAGTCACTGGAGCAACTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTT < 2:741791/140‑1 GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGATGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGATTTACCCAGATGACGACCGACATACTAAAGTAATTCC > 2:216848/1‑143 GACAGCTCATAGAAACCGAAGCCACTGGTGCACCTCAAAAACACCCTCCTTCACGTCATCGGTACGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCC < 2:906639/143‑1 ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGATTTAAACAGATGACGACCGACATACTAAATTACTTCgg > 1:371384/1‑141 TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCACTGGCGATGGGTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCC > 1:211513/1‑143 GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCAGCATACACTAAATCAGTAAGTTGGCGGCATCACCAATAAGTTGATCGCAATGGCGATGGTGTTACCCAGATGACGACCGACCTACTCAGTTACTTCCGACGACA > 1:292181/1‑143 AGAAACAGAAGCCACTGGAGCACCTCAACAACACCAGCATACGCTAAGTTTGTGAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACACAGATGACGACCGACGTACTCAATTACTTCCGACGCCAGca > 1:258532/1‑141 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTCAATCAGTAAGTTGGCAGCATCACCAATAAGATGATAGCAATGGCGATGGAATCACCCCGATGACGACCGACAGACTCAATTACTTAGGCAGCCAGACaa > 2:829434/1‑141 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATACGTTGATAGAAATAGAGATGGATATACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTA > 1:834531/1‑143 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATCCTCAATTACTTCGGCCGCCCGACTc > 1:191237/1‑142 cCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATC < 2:310691/142‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCG > 1:811897/1‑143 GCCACTGGAGCGCTTCAAAAACACCATCATACACTACATCAGTAAGTTGGCAGCATCACTAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTT < 2:717998/143‑1 GCCACTCGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTT < 1:859328/143‑1 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGT > 1:906691/1‑143 TGGTGCACCTCAAAAACTCCATCATACACTAAAGCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCG < 1:204298/143‑1 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCATCTGTTCG > 2:466333/1‑143 GAGCACCTCAAAAACACCATCATACACTCAAACAGTCAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCG > 1:481098/1‑143 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCACTTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTG > 2:376780/1‑143 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTG < 1:894095/143‑1 AAACACCCTCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTCCGCGGCTTTGCAGAT < 2:789371/143‑1 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGAT > 1:605569/1‑143 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATGGCGGTGGCGAACATTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTT < 1:679766/143‑1 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGACAGTTgt > 1:36852/1‑141 ACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGCTAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTCTCGCCTGTGTTCGCGGCTTGGCAGCTCGTGGTGATGGTcc > 2:380573/1‑141 TAAATCACTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAG < 1:161436/143‑1 AAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCAAGATGACGACCGCCATACTCAATTACTTCCGACGCCAGACTATCACCTTTGTTCGCGGCTTTCGGGATGGTTTTGtggggtcatt > 1:113234/1‑133 ATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATcgcaccgtcg > 1:356275/1‑133 ATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCG > 1:841765/1‑143 TAAGTTGGCAGCATCACCAATAAGTTGATAGCGATGGCGATGGTTTTACCCTGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAG > 2:488378/1‑143 TAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGATTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAG > 1:813650/1‑143 CCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGG < 1:412914/143‑1 GCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258534‑258675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGG > NC_000913/700597‑700737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |