New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)52 (0.980) 43/282 0.2 96.3% intergenic (+776/‑1) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 700597 = 2 (0.040)coding (998/1221 nt) nagC N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor

GCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258534‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGG  >  NC_000913/700597‑700737
                                                                                                                                                                                                                                                                                           
GCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCA                                                                                                                                              >  2:64549/1‑143
 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAA                                                                                                                                             <  2:624163/143‑1
        tgCCGGCGGTGGTTTTGCCGTTAGGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTG                                                                                                                                      <  2:266896/141‑1
        GTCCGGCGGGGCTTTTGCGGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTG                                                                                                                                      <  1:405075/143‑1
          cggtCGGTGTTTTGTCCGAGACGCAACACCTCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAAGCAGTAAGTTGGCAGCATCACCAATAAGTTGAT                                                                                                                                    <  2:65491/139‑1
           CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATA                                                                                                                                   <  2:78441/143‑1
           CGGCGGTGCCGCTGCCGTTACCCACCAACCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAACTTGGCAGCCTCACCAATAAGTTGATA                                                                                                                                   <  2:717743/143‑1
                GTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGACACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTCGCCGCCTCACCAATAccgtgaaagaaat                                                                                                                              >  2:684868/1‑130
                 TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATG                                                                                                                             >  1:230227/1‑143
                  GCTTGTGGCGTTACGCACCACGCAGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGG                                                                                                                            <  1:121258/143‑1
                      TTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGAg                                                                                                                        >  2:592049/1‑142
                            TTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTT                                                                                                                  <  2:671723/143‑1
                            TTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGACAGCATCACCAATAAGTTGAGACCAACGGCGAacgttcc                                                                                                                  >  2:710089/1‑136
                             TACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTA                                                                                                                 <  2:920609/143‑1
                                  ACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCACAAAAACACCATCATACACTAAATCAGTAAGCTGGCAGCACCCCCACACAGTTGATAGCAATGGCGATGGGTTTACCCAG                                                                                                            >  2:430790/1‑143
                                     ACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATG                                                                                                         >  2:652867/1‑143
                                       CCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGAC                                                                                                       <  1:362086/143‑1
                                                  cttaatatGAGGTACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATAC                                                                                            <  1:297093/135‑1
                                                      ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGGTAGCAATGGCGATGGTTTTACCCAGATGACGACCGGCATACTCAA                                                                                        >  1:596237/1‑143
                                                          GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTAC                                                                                    >  1:730802/1‑143
                                                            ggaACAGCTGATAGAAACAGAAGTCACTGGAGCAACTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTT                                                                                  <  2:741791/140‑1
                                                              GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGATGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGATTTACCCAGATGACGACCGACATACTAAAGTAATTCC                                                                                >  2:216848/1‑143
                                                              GACAGCTCATAGAAACCGAAGCCACTGGTGCACCTCAAAAACACCCTCCTTCACGTCATCGGTACGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCC                                                                                <  2:906639/143‑1
                                                               ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGATTTAAACAGATGACGACCGACATACTAAATTACTTCgg                                                                               >  1:371384/1‑141
                                                                    TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCACTGGCGATGGGTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCC                                                                          >  1:211513/1‑143
                                                                     GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCAGCATACACTAAATCAGTAAGTTGGCGGCATCACCAATAAGTTGATCGCAATGGCGATGGTGTTACCCAGATGACGACCGACCTACTCAGTTACTTCCGACGACA                                                                         >  1:292181/1‑143
                                                                        AGAAACAGAAGCCACTGGAGCACCTCAACAACACCAGCATACGCTAAGTTTGTGAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACACAGATGACGACCGACGTACTCAATTACTTCCGACGCCAGca                                                                      >  1:258532/1‑141
                                                                          AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTCAATCAGTAAGTTGGCAGCATCACCAATAAGATGATAGCAATGGCGATGGAATCACCCCGATGACGACCGACAGACTCAATTACTTAGGCAGCCAGACaa                                                                    >  2:829434/1‑141
                                                                          AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATACGTTGATAGAAATAGAGATGGATATACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTA                                                                    >  1:834531/1‑143
                                                                          AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATCCTCAATTACTTCGGCCGCCCGACTc                                                                    >  1:191237/1‑142
                                                                            cCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATC                                                                  <  2:310691/142‑1
                                                                             CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCG                                                                 >  1:811897/1‑143
                                                                                  GCCACTGGAGCGCTTCAAAAACACCATCATACACTACATCAGTAAGTTGGCAGCATCACTAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTT                                                            <  2:717998/143‑1
                                                                                  GCCACTCGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTT                                                            <  1:859328/143‑1
                                                                                    CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGT                                                          >  1:906691/1‑143
                                                                                       TGGTGCACCTCAAAAACTCCATCATACACTAAAGCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCG                                                       <  1:204298/143‑1
                                                                                       TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCATCTGTTCG                                                       >  2:466333/1‑143
                                                                                         GAGCACCTCAAAAACACCATCATACACTCAAACAGTCAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCG                                                     >  1:481098/1‑143
                                                                                               CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCACTTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTG                                               >  2:376780/1‑143
                                                                                               CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTG                                               <  1:894095/143‑1
                                                                                                    AAACACCCTCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTCCGCGGCTTTGCAGAT                                          <  2:789371/143‑1
                                                                                                    AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGAT                                          >  1:605569/1‑143
                                                                                                         CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATGGCGGTGGCGAACATTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTT                                     <  1:679766/143‑1
                                                                                                          CATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGACAGTTgt                                    >  1:36852/1‑141
                                                                                                                  ACTAAATCAGTAAGTTGGCAGCATCACCAATAAGTTGCTAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTCTCGCCTGTGTTCGCGGCTTGGCAGCTCGTGGTGATGGTcc                            >  2:380573/1‑141
                                                                                                                    TAAATCACTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAG                          <  1:161436/143‑1
                                                                                                                     AAATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCAAGATGACGACCGCCATACTCAATTACTTCCGACGCCAGACTATCACCTTTGTTCGCGGCTTTCGGGATGGTTTTGtggggtcatt                         >  1:113234/1‑133
                                                                                                                       ATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATcgcaccgtcg                       >  1:356275/1‑133
                                                                                                                       ATCAGTAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCG                       >  1:841765/1‑143
                                                                                                                            TAAGTTGGCAGCATCACCAATAAGTTGATAGCGATGGCGATGGTTTTACCCTGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAG                  >  2:488378/1‑143
                                                                                                                            TAAGTTGGCAGCATCACCAATAAGTTGATAGCAATGGCGATGGATTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAG                  >  1:813650/1‑143
                                                                                                                                            CCAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGG  <  1:412914/143‑1
                                                                                                                                                                                                                                                                                           
GCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258534‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGG  >  NC_000913/700597‑700737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.