New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078058 (0.150)35 (0.750) 32/250 0.4 76.8% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 14 (0.300)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

GCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207666‑1207947
                                                                                                                                             |                                                                                                                                              
attacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa                                                                                                                                               >  1:79733‑M1/127‑143 (MQ=255)
  ccgccTGTAGACGCGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTATGCCGCAA‑‑GAATCCGTTGGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg                                                                                                                                           <  2:50785‑M1/141‑6 (MQ=255)
    gCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTACGGCGCAA‑‑GAATCCGTTTGGCGATATCTAATCGGATGGCTCTGTGCAAACGGCTCGCGCAACCCTTGCTTTGGGCGAAGGctctgcc                                                                                                                                         >  2:461418‑M1/1‑136 (MQ=255)
         gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacc                                                                                                                                    >  1:789401‑M1/1‑131 (MQ=255)
           gatttctgtgctggttatgtgttgatacgcgtacatagccaataagcatgttaaagccccctggtaaaagcaggaaggaggccatgtgcgggttatttcttcatgttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                    >  1:139907‑M1/116‑143 (MQ=255)
            atctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGCGCAAAACTAAAt                                                                                                                                   <  2:10561‑M1/29‑1 (MQ=255)
            aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTGGGTTTGGGAGCAGGctctggcttacctat                                                                                                                                 >  2:548945‑M1/1‑128 (MQ=255)
                     cACGACCAGTTGCTTACGGGAGTGCGCGCGCTGTTGTGAAGGCGGAA‑‑GAAGGCGTGTGGCGATATCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctggtggtgtccc                                                                                                                        <  2:37218‑M1/143‑25 (MQ=255)
                     cACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGCTGGGAGAAGGAGCGACACTCAATGCAGCCACGGc                                                                                                                        >  2:680992/1‑143 (MQ=21)
                      tggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccattagattgtaatttcttcattttcataaacgATGGATTGGGAGaaggagaaaaactccttgtgacatcgt                                                                                                                         <  2:548958‑M1/39‑14 (MQ=255)
                       cgacgcgttacttACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGACATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccgg                                                                                                                      <  1:72287‑M1/137‑27 (MQ=255)
                        gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgctttttagttcttaatatcaagagagtTTGGTTTGGGAGACGGAGCAAAACTCAATGCAGCAACGGCt                                                                                                                       <  1:635474‑M1/41‑1 (MQ=255)
                        gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgtcctttcttcattctcatgaaagCTCAACTGGGAGAACGAGCAAAACTCAATGCAGCAACGGCt                                                                                                                       <  2:905387‑M1/41‑1 (MQ=255)
                         actctgtaactacCGCACTTTGCGCGCGTCTGTTAAGCGGCAA‑‑GAATCCGTTTGGCGATATCAAATCGCATTGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa                                                                                                                    <  2:51661/133‑1 (MQ=21)
                          ccAGTTACTTGCCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCTATATCAAATCGGATGGCACGGTGCAACCGGCTCTCGAAAACCTGGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc                                                                                                                   <  2:842406‑M1/143‑30 (MQ=255)
                          ccAGTTACTTCCCGCACTTCGCGCGCTGCTGTTAAGCCGCCA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc                                                                                                                   <  2:846572‑M1/143‑30 (MQ=255)
                          ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc                                                                                                                   >  1:765568‑M1/1‑114 (MQ=255)
                              tgacgtacCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAAGCCGTTTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                               <  1:759143/138‑1 (MQ=255)
                                 tgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACACTAGGa                                                                                                              >  1:450424‑M1/94‑143 (MQ=255)
                                 ctcgccgcgttgcgcgcgctgctgttgagcCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc                                                                                                            <  2:187639‑M1/131‑37 (MQ=255)
                                 attcccgcacTTCGCGCGCTGCTGTTAAGCCGAAAACTAATTCG‑‑CGGCTATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc                                                                                                            <  2:656690‑M1/139‑37 (MQ=255)
                                    tacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttggtatttcttcgttttcataaacgATGGTTGGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGCCGc                                                                                                           <  1:531480‑M1/53‑1 (MQ=255)
                                    acCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttacgtggccttc                                                                                                         >  1:301320‑M1/1‑104 (MQ=255)
                                     ccGCACCTCGCTCGCTGCTGTTAAGCCGCAC‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca                                                                                                        <  2:865297‑M1/143‑41 (MQ=255)
                                       gcgttcatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttattacttaattttcataaacaATGGTTTGGGCGAAGGAGCAAAACTCAATGAAAcaacggctacatgagaagggact                                                                                                        <  2:109980‑M1/56‑12 (MQ=255)
                                       gcgtacatagccaataagcatgttaaatccccctggtaaacgcagcaatgatgccatttgcttgttatttcttcattttcatacacgTTGGTTTGGGAGAAGGAGCAAAACTCGATGCAGCAACggctaccttacgctccccc                                                                                                        <  1:851792‑M1/56‑10 (MQ=255)
                                       gcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAGCTGCTACATGAGGACGAAcc                                                                                                        <  2:763684‑M1/56‑1 (MQ=255)
                                       gcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGACAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGacgcccc                                                                                                        <  2:741777‑M1/56‑4 (MQ=255)
                                             atagccaataagcatgttaaatccccctagtaaaagcagcaatgatgccatttgcttgttatttcttcattttcctaaccgATGGTCTGAGAGAAGGCGCAAAACTCACTGCAGCAACGGCTACATTAGCACgcaccgcctcc                                                                                                  <  2:533809‑M1/62‑6 (MQ=255)
                                               agccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                                <  1:6662‑M1/64‑1 (MQ=255)
                                                gccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                               <  2:431210‑M1/65‑1 (MQ=255)
                                                 cccatacgcttggtcaatccgcctggtaacagcaggaatgacgccatttgcttgttatttcttcattttcataaaggTTGGTTTGCGAGAAGGAGCAAAACTCAATGCAGCAACGCCTACATTAGGACGCACCGGTTTCATAg                                                                                              >  2:58661‑M1/78‑143 (MQ=255)
                                                 ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                             >  1:184539‑M1/78‑112 (MQ=255)
                                                 ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                             <  2:184539‑M1/35‑1 (MQ=255)
                                                  caatacgcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCCATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                                             >  1:503024‑M1/77‑143 (MQ=255)
                                                    agaagcatgttaaatccccctggtaagagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGGGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGgacgcaccggtatagtagtta                                                                                           >  2:378676‑M1/75‑133 (MQ=255)
                                                      ctgTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctggtggtgtcccggttccgtggcccccagcccctcccacaacagg                                                                                       >  2:383826‑M1/1‑86 (MQ=255)
                                                      aagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGGGAAGGAGCAAAACTCAATGCAGCACCGGCTACATTAGGACGCACCGGTTTCATAGCtata                                                                                         <  2:649470‑M1/71‑1 (MQ=255)
                                                            gtgaaatccccctggtaaaagcaggaatgatgccatctgcttgttatgtcttcattttcataaacgTTGGTTTGCGAGACGCAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                                   >  1:586687‑M1/67‑143 (MQ=255)
                                                             ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                                  <  1:609793‑M1/78‑1 (MQ=255)
                                                              ccGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa                                                                               >  1:389154/1‑143 (MQ=255)
                                                               cGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaa                                                                              <  1:54504‑M1/143‑67 (MQ=255)
                                                                 cAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaat                                                                            >  1:502506‑M1/1‑75 (MQ=255)
                                                                  acacgaaccCGTTTGGCGATATCACCTCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGCGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa                                                                             <  2:141286‑M1/139‑68 (MQ=255)
                                                                    ctgctggtaaaagcaggaatgatgccgtttgcttgttatttcttcatttgcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTGCATAGCTATACCGGTTATGATtgg                                                                           >  2:501577‑M1/59‑143 (MQ=255)
                                                                     ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                          >  1:852874‑M1/58‑143 (MQ=255)
                                                                     ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                          >  2:741280‑M1/58‑143 (MQ=255)
                                                                     ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                          <  2:392299‑M1/86‑1 (MQ=255)
                                                                        tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTggtggt                                                                       <  2:347760‑M1/89‑1 (MQ=255)
                                                                         gggaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTa                                                                      >  1:613544‑M1/54‑143 (MQ=255)
                                                                           caaaagcaggaattgtgccatttgtttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCACTAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                                    >  2:293774‑M1/52‑143 (MQ=255)
                                                                             tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgc                                                                  >  2:593351‑M1/1‑65 (MQ=255)
                                                                             aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                  >  2:176688‑M1/50‑143 (MQ=255)
                                                                              ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgcc                                                                 <  2:376460‑M1/143‑80 (MQ=255)
                                                                              aagcaggaatgatgccatttgcttgtaatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTGTACCGGTTAGGAATGGGGGTATGGAg                                                                 <  1:42735‑M1/95‑1 (MQ=255)
                                                                                  cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcagtggtgccgctt                                                             >  1:100820‑M1/1‑60 (MQ=255)
                                                                                   gATACCAACGCGGAGGGTACTGTGCCAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgttgccttcagccactccgccaacaggccagcttaagtgcaatggtgccgcttt                                                            <  2:116216‑M1/143‑85 (MQ=255)
                                                                                    atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccgattccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttt                                                           >  1:572245‑M1/1‑58 (MQ=255)
                                                                                        gatgccatttgcttgttatttcttcattttcataaacgATGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                                       <  2:108920‑M1/105‑1 (MQ=255)
                                                                                         aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcccacaggctggctgaaatgcaatggtgccgctttctctgc                                                      >  2:334009‑M1/1‑53 (MQ=255)
                                                                                         aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAAt                                                      >  1:702656/1‑143 (MQ=255)
                                                                                            tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGTTTTCGGAGAAGGctctgcattacctgttgttttcccggttccgttgccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctga                                                   <  1:556561‑M1/143‑94 (MQ=255)
                                                                                               gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc                                                                                                                          <  1:267120‑M1/69‑23 (MQ=255)
                                                                                               gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc                                                                                                                          >  2:267120‑M1/1‑47 (MQ=255)
                                                                                                   gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatac                                            >  1:859449‑M1/1‑43 (MQ=255)
                                                                                                    ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGATTATGAGTGGGGGTATTCAGCAATCAGTAATCAGTCAGTggg                                           <  2:105908‑M1/117‑1 (MQ=255)
                                                                                                     aCTGTGGCAACTGCTCTTGAATTCTTTGGTTTTGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaataccc                                          <  2:101319‑M1/143‑103 (MQ=255)
                                                                                                      gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggggg                                         <  2:570331‑M1/119‑1 (MQ=255)
                                                                                                       ttattgcttcacgttcagagacgTGGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGGAATCATTCAGTGGGGGt                                        >  2:86719‑M1/24‑143 (MQ=255)
                                                                                                       tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccgg                                        >  1:730606‑M1/1‑39 (MQ=255)
                                                                                                        tatttcttctttttcataaacgTTGGTTTGAGAGAGGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACTGGGTTCATATCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTg                                       >  1:495249‑M1/23‑143 (MQ=255)
                                                                                                         tgCAAGCGGCTTTCGAACGCGTTGGGTTGGGGGAGGGctctgcattacctgttggtgtcccggtgccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaa                                      <  2:647657‑M1/143‑107 (MQ=255)
                                                                                                         atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAGCAGTCATCATTCAGTGGGGGTgg                                      <  2:465820‑M1/122‑1 (MQ=255)
                                                                                                           cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtagccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaact                                    >  1:202768‑M1/1‑35 (MQ=255)
                                                                                                               cGGCTCTCGAAAACCGTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                                <  1:434296/143‑1 (MQ=255)
                                                                                                                 gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcagtacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaa                              <  1:606453‑M1/143‑115 (MQ=255)
                                                                                                                   tttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaa                            <  1:638910‑M1/132‑1 (MQ=255)
                                                                                                                   tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgcccctttttctgctgaagaatacccggaacgggcaaagg                            >  2:377978‑M1/1‑27 (MQ=255)
                                                                                                                   tcgcgaatgcctgggtgtggGAGAAGGctctgcattagctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagg                            <  2:397988‑M1/134‑117 (MQ=255)
                                                                                                                     taataaaCGTTTGTTTGGGAGAAGGAGAGAAACTTAATGGAGTAACGGCTATATTAGGACTCACCGGTTTCATAGCTATACTGGTTATGATTGGTGGTATTTAGTAATCAGTAATCATTTAGTGGGGGTGGAATGCTGCaaaa                          <  2:619614/139‑1 (MQ=255)
                                                                                                                       gAAAACCTTGGTTTGGGAGAAGGatctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgccgcagaataccaggaactgacaaaggctta                        >  2:746839‑M1/1‑23 (MQ=255)
                                                                                                                         aaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAACCAt                      <  1:846745‑M1/138‑1 (MQ=255)
                                                                                                                             cTTGGTTTGGGAGAAGGAGCGCGCTCCAACGCAACAACGACTGTAGAAGTGCGCACCGGTTTCATAGCTAGACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc                  <  1:127553/143‑1 (MQ=255)
                                                                                                                              ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggggccgctttttctgctgaagaatacccggaactggcaaaggcttatccgaca                 >  1:140287‑M1/1‑16 (MQ=255)
                                                                                                                                 gTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaat              >  1:904533‑M1/1‑13 (MQ=255)
                                                                                                                                  TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATCGCTATACCGGTTACGATTGGTGGTATTGAGAAATAAGTAAACATGCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTg             <  2:103323‑M1/143‑1 (MQ=255)
                                                                                                                                   TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCCACAGCCTCTTCTTCTgg            <  1:111890‑M1/143‑1 (MQ=255)
                                                                                                                                      ggAGAAGGctctgcagtacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccgaaactggcaaaggcttatccgacaaataaatt         <  2:585318‑M1/143‑136 (MQ=255)
                                                                                                                                      GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg         >  1:242687‑M1/1‑143 (MQ=255)
                                                                                                                                       gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagattccccggaactggcaaaggcttatccgacaaataaattg        <  1:258694‑M1/143‑137 (MQ=255)
                                                                                                                                       gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcacaggcttatccgacaactaaattg        >  1:167276‑M1/1‑7 (MQ=255)
                                                                                                                                           aGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcggccaacaggctggctgaaagtcaattgtgttgttttaactacagaagaatacccggaactggcaaatgcttatccgacaaataaattgcctg    <  2:661934‑M1/143‑141 (MQ=255)
                                                                                                                                            ggctctgcattacctgttggtgtctctgttccttggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgc   >  2:115575‑M1/1‑2 (MQ=255)
                                                                                                                                            ggctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctga   >  1:821648‑M1/1‑2 (MQ=255)
                                                                                                                                            GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGACTCTGGGGGGGATgg   <  1:34095‑M1/143‑1 (MQ=255)
                                                                                                                                             gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaatcgccgggt  >  2:403214‑M1/1‑1 (MQ=255)
                                                                                                                                             GAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTCATAGCGATACCGGTTATGATGGGTGGTATTGAGCAATCAGTAATCATTCAGGGGGGGTGGAATGCCGCAAAAGCATCTCCCTGTGGGGGGGATGGa  <  2:275762‑M1/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
GCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207666‑1207947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.