New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1691425 =NA (NA)4 (0.090)
+GATTTTGCGTTTGTCATCAGACTT
4/234 6.5 NA noncoding (1/97 nt) RIP126 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site RIP126 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
?NC_000913 = 4470517 NA (NA)intergenic (+195/+11) mgtA/ridA magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification
Rejected: Coverage evenness skew score above cutoff.

GAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGG  >  NC_000913/1691289‑1691560
                                                                                                                                        |                                                                                                                                       
gaagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                                                                                                                   >  2:156439/1‑143 (MQ=255)
gaagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                                                                                                                   <  1:586466/143‑1 (MQ=255)
 aagaTTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTGTCACTCCGGCGTTTTCATCTGAAAACCAACCAGAGATTGCCTGagg                                                                                                                                  >  2:556443/1‑141 (MQ=255)
      tttGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTa                                                                                                                             <  2:253714/143‑1 (MQ=255)
       ttgttgGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                                                                                                            >  1:732897/1‑143 (MQ=255)
             gCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGCGATTGCCGGATGCGCTACGCTGAt                                                                                                                      >  2:508741/1‑143 (MQ=255)
              cATGTTTGCGATGCCAGCTCGTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCCGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATc                                                                                                                     <  1:323288/143‑1 (MQ=255)
               aTGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGACTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCa                                                                                                                    <  2:630019/143‑1 (MQ=255)
                      cGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                                                                                                             <  1:685519/143‑1 (MQ=255)
                          gccggccgttATCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATGTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt                                                                                                         <  2:469260/135‑1 (MQ=255)
                            cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTc                                                                                                       >  1:812261/1‑143 (MQ=255)
                             aGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACGCCGGCGTGTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTcc                                                                                                      <  2:21244/143‑1 (MQ=255)
                                tctTAACGTTCCGGCTGCACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGc                                                                                                   <  1:435451/143‑1 (MQ=255)
                                 ctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTCCGCTTATCACGCCTACCTTTTCCTCCa                                                                                                  >  2:199509/1‑143 (MQ=255)
                                  ttAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCac                                                                                                 >  2:767289/1‑142 (MQ=255)
                                  ttAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCaa                                                                                                 <  2:871258/143‑1 (MQ=255)
                                  ttAACGTTCCGGCTGTACCGGCAATTACGCAGCCTTTAGTCCCGGCCAAAACGCCGGAGAATTTTCACTCCGGCCTTTTCATCTGAAAACAAACCACAGATTGCCTGACGGCCCACCCTCAACCGGCCCACCTTCTCCTgaca                                                                                                 >  2:513634/1‑140 (MQ=255)
                                    aaCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAaca                                                                                               <  2:28651/143‑1 (MQ=255)
                                    aaCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATGCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAaca                                                                                               <  1:685974/143‑1 (MQ=255)
                                       gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCCGGCCTACCCTTTCCTGCacgcctc                                                                                            >  2:923867/1‑137 (MQ=255)
                                       gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACtt                                                                                            <  1:89109/143‑1 (MQ=255)
                                        ttgcGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAGCGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACttt                                                                                           <  2:897442/140‑1 (MQ=255)
                                              cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAAttt                                                                                     <  2:671386/143‑1 (MQ=255)
                                                gTACCGGCAATTCCGCAGCACCAAAGCCCGGCCATAATTCGGGAGAATGTTCACTGCGGCGTTTTCATCTGAAACCAAACCAGAGATTGCCTGATGCGCTACGCTTATCCGGCCTACCTTTTCCTGCACCACTTCGCATTTAt                                                                                   >  2:914747/1‑143 (MQ=255)
                                                     ggCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCCTCTGCAAACCAACCAGAGATTGCCTGATGCGCTACGCTTATCACGCCTCCCTCTTCCCGCAACCCTTCCAAtttcggagct                                                                              >  2:357953/1‑136 (MQ=255)
                                                         aTTGCGCAGCAGGAATTCACGGCCAAAGCGCCGGAGAATTGTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGTGCTACGCAGATCATGCCCACATTTTCCTGCGACACTTTGAATTTATGAGTTTTTg                                                                          <  1:352837/143‑1 (MQ=255)
                                                          ttCCGCAGGAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCTGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGt                                                                         <  1:864479/143‑1 (MQ=255)
                                                              gcagcaGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGc                                                                     >  1:731096/1‑143 (MQ=255)
                                                                agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTg                                                                   <  2:732615/143‑1 (MQ=255)
                                                                   agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGAt                                                                >  1:15877/1‑143 (MQ=255)
                                                                     tAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATac                                                              >  1:69334/1‑142 (MQ=255)
                                                                       aTTCACGGCCAAAACGCCGGAGACTTTTTTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAgg                                                            <  1:831277/143‑1 (MQ=255)
                                                                                 aaaaCGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTAcgcc                                                  <  1:520194/143‑1 (MQ=255)
                                                                                         ggAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTCTGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCgg                                          <  2:216160/143‑1 (MQ=255)
                                                                                          gagaATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCGTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTGGGCTGGATAAGGCGTTTACGCCGCATCCGGc                                         >  1:476258/1‑143 (MQ=255)
                                                                                              aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATaa                                     >  2:264115/1‑143 (MQ=255)
                                                                                               ttttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATaaa                                    >  2:331449/1‑143 (MQ=255)
                                                                                                  tgtcTCAGGCGGTTTCATCTGAAAGCAGGCCATGGGTTGCCTGGTGCGCTACGGTTGTCAGGCCTACCGTCTCCTGCAACACTGTGAATTGATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATaaaaaa                                 <  2:779948/140‑1 (MQ=21)
                                                                                                        cGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGCTAAGGCGTTTACGCCGCATCCGGCATAACACACGCGCa                           >  2:695785/1‑143 (MQ=255)
                                                                                                           cGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCAGCATCCGGCATAAAAGACGCGCACtt                        >  2:859961/1‑143 (MQ=255)
                                                                                                            gctttCATCTGCAACCAACCCCGAGATTGCGTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACttt                       <  1:632587/141‑1 (MQ=37)
                                                                                                                 cATCTGAACACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTcaa                  <  2:605727/143‑1 (MQ=255)
                                                                                                                   tCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTcaaca                >  2:126975/1‑143 (MQ=255)
                                                                                                                      gAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACCTTGAATTTATGAGTTTTTGTAGGCTCGATAACGCCTACGCGTTGAATGCGGCATAAAAAACGCGCCCTTTGTCAGCAATc             >  2:193115/1‑143 (MQ=25)
                                                                                                                         aacaaacCAGGGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGa          <  2:865059/143‑1 (MQ=255)
                                                                                                                         aacaaacCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCGGa          >  1:571322/1‑143 (MQ=255)
                                                                                                                           caaacCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGaaa        <  1:274667/143‑1 (MQ=255)
                                                                                                                                 agagATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACCCTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGCCAACAATCTGAAACGCCgg  >  1:730220/1‑143 (MQ=255)
                                                                                                                                        |                                                                                                                                       
GAAGATTTTGTTGGCATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGG  >  NC_000913/1691289‑1691560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.