New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3598396 =NA (NA)4 (0.090)
+GATTTTGCGTTTGTCATCAGACTT
4/234 6.5 NA noncoding (1/99 nt) RIP259 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site RIP259 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
?NC_000913 = 4470517 NA (NA)intergenic (+195/+11) mgtA/ridA magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification
Rejected: Coverage evenness skew score above cutoff.

TGCTGGTGGATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAA  >  NC_000913/3598262‑3598538
                                                                                                                                      |                                                                                                                                              
tGCTGGTGGATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATgc                                                                                                                                        <  2:551259/143‑1 (MQ=255)
        ggtggtggATGCAGGCGTGGAAGCGCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCt                                                                                                                                <  2:327558/141‑1 (MQ=255)
         aTGGCGGGTGTAGGCGTGGGTGATCGCGGTGTGATGACGGGGGTTATGCAGGCGCTGTGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCtt                                                                                                                               <  2:79956/143‑1 (MQ=255)
          tGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAACAGTGATATTGCCTGATGCGCTACGCTTa                                                                                                                              >  2:308537/1‑143 (MQ=255)
           ggCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTACGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATg                                                                                                                                         <  1:19464/131‑1 (MQ=255)
           ggCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTACGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATg                                                                                                                                         >  2:19464/1‑131 (MQ=255)
            gCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATc                                                                                                                            >  1:230584/1‑143 (MQ=255)
             cGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCGGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCa                                                                                                                           >  1:24297/1‑143 (MQ=255)
                gtGCAGGCGTGGGAGATCGCGGTGTGATGACGGCGGTTGTGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGc                                                                                                                        <  2:494189/142‑1 (MQ=255)
                 tGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGcc                                                                                                                       <  2:452960/143‑1 (MQ=255)
                  gtagggttgcgtgATCGCACTGTGATTACTGGGTTTATGCAGGAGCTGGAGATGACGGGACAACAGGGCGGCTGGGAGAAGGGTTAAGCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCt                                                                                                                      <  1:340460/131‑1 (MQ=255)
                  gCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCt                                                                                                                      <  1:199426/143‑1 (MQ=255)
                    aGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAGAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTAc                                                                                                                    >  1:409103/1‑143 (MQ=255)
                      gCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACaa                                                                                                                  >  1:803197/1‑143 (MQ=255)
                       cggggaggagggcgGTGGGATGACGGCGTTTATGCGGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAAt                                                                                                                 <  2:618650/132‑1 (MQ=39)
                         tGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCATCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCAACGCTTATCCGGCCCACACtgt                                                                                                               >  2:919134/1‑143 (MQ=255)
                          cggaggtCGGGGTGGGATGACGGCGTTTATGGAGGAGCTGGGGTTTACGGCGCAACAGGGCGGCTGGGAGAGGTGTTAATCGTCAAGTTTGATTTCAAAAGTGGTATGGCCTGATGCGCTACGCTTATCAGGCCTACAAtgtg                                                                                                              <  2:892260/137‑1 (MQ=255)
                              ggtCGCGGTGGGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGtt                                                                                                          <  1:566688/141‑1 (MQ=255)
                               aTCGCGGTGTGAGGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAAACGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTg                                                                                                         <  2:263204/143‑1 (MQ=255)
                                tCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGc                                                                                                        >  1:500850/1‑143 (MQ=255)
                                tCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGc                                                                                                        >  1:318498/1‑143 (MQ=255)
                                        tgatgaCGGCGTTTATGCAGGCGCTGGTGTTTACGGCACAACAGGGCGGCTGGGCGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACt                                                                                                >  1:484652/1‑143 (MQ=255)
                                        tgatgaCGGCGTTTATGCAGGCGCTGGTGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACt                                                                                                >  1:308762/1‑143 (MQ=255)
                                              cGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTc                                                                                          >  1:730360/1‑143 (MQ=255)
                                               ggCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCACGCCTACAATGTGTGTTGCAACCTACTGACTTCt                                                                                         >  1:7413/1‑143 (MQ=255)
                                                gCGTTTCTGCGGGCGCTGGGGGTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCtt                                                                                        <  1:845060/143‑1 (MQ=255)
                                                 cgggtATTCAGGAGCTGGGGTTTACGGCACGACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCttt                                                                                       <  2:833538/139‑1 (MQ=255)
                                                   gtgcggCAGGCGCTGGGGTTTTCGGCCCAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGACTTCAATAGTGATATTGCTTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTgg                                                                                     <  2:540506/138‑1 (MQ=255)
                                                    ttgtGCAGGCGCTGGGGTTTACGGCACAACAAGGCGGCTGGGAGAAGTGTTAATAGTCAAGGTGGAGTTCGAAAGTGATATTGCCTGATGCGCTGCGCTTATCAGGCCGGCAATGTGTGTTAGAATTTAGTggagtcgttgtg                                                                                    >  2:243338/4‑132 (MQ=255)
                                                        gCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGTTCTTGCCTGATGCGCGACGGTTATCAATCGTACTAGGTGTTGTGCAATTTACTGATTTCTTTGGATCtt                                                                                <  1:394380/143‑1 (MQ=255)
                                                         cAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGTAATTTACTGATTTCTTTGGATATTg                                                                               >  2:120119/1‑143 (MQ=255)
                                                          aGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGCTTTCAAAAGAGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGt                                                                              >  1:415857/1‑143 (MQ=255)
                                                            gcgcTGGGGTTTACGGCACAACGGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAg                                                                            <  1:274043/143‑1 (MQ=255)
                                                                tGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCg                                                                        >  2:32970/1‑143 (MQ=255)
                                                                 ggggTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCgg                                                                       >  1:67133/1‑143 (MQ=255)
                                                                     tttACGGCTCAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATaa                                                                   <  2:789159/143‑1 (MQ=255)
                                                                        gcGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTGGATTTCAACAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTCTTGCAATTTACAGATTTCTTTGGATCTTGTAGGCCGGATAAGGc                                                                <  1:839673/142‑1 (MQ=255)
                                                                            cacaACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGttt                                                            >  1:472018/1‑143 (MQ=255)
                                                                            cacaACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGttt                                                            >  1:491958/1‑143 (MQ=255)
                                                                               aacaGGGCGGCTGGGCGAAGTGTTAATCGTCAAGTTTGATGTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcg                                                         <  2:758695/143‑1 (MQ=255)
                                                                                          tGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                              >  1:197700/1‑143 (MQ=255)
                                                                                          tGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                              <  2:264229/143‑1 (MQ=255)
                                                                                             gagaAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATg                                           >  2:454238/1‑143 (MQ=255)
                                                                                              agaAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGTAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGa                                          >  1:471718/1‑143 (MQ=255)
                                                                                                aaGTGCTGATGGTCACGTTTGATGTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAg                                        <  2:160252/143‑1 (MQ=37)
                                                                                                   tgtTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCaa                                     >  2:364115/1‑143 (MQ=255)
                                                                                                           gTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCg                             >  1:719276/1‑143 (MQ=255)
                                                                                                             caagggtGATCTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGat                           <  1:549920/137‑1 (MQ=255)
                                                                                                                 gtggATTGCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTa                       <  1:733647/140‑1 (MQ=255)
                                                                                                                      tttCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAAt                  >  2:696758/1‑143 (MQ=255)
                                                                                                                        tCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAAttt                >  1:40079/1‑143 (MQ=255)
                                                                                                                           aaaGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTggc             >  1:13533/1‑143 (MQ=255)
                                                                                                                                gATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCCATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCaa        <  1:92891/143‑1 (MQ=255)
                                                                                                                                 ggatggCCTGATGGGCTACGCGTATCAGTCCTACACTGTGTAGCGCAAGTTGCTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAAc       <  1:425250/138‑1 (MQ=37)
                                                                                                                                      gCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCaaa  <  2:318498/143‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                              
TGCTGGTGGATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAA  >  NC_000913/3598262‑3598538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.