Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 45 [0] [1] 45 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)40 (0.810) 36/262 0.3 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815800‑3816079
                                                                                                                                            |                                                                                                                                           
acctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttaattttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgacagcgccgccttctgcCGt                                                                                                                                           >  2:280442‑M2/141‑143 (MQ=255)
 cctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTc                                                                                                                                          <  2:684938‑M2/4‑1 (MQ=255)
                        ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                                   <  1:829654‑M2/27‑1 (MQ=255)
                        ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                                   >  1:741915‑M2/117‑143 (MQ=255)
                         taaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggagacagatcagtagccttaaaaataagtttgccagggcagccttctgcAGTCCCCTGCACTTCAATGATGCGACCg                                                                                                                  >  1:88677‑M2/116‑143 (MQ=255)
                               ggtgctgatatgctttcgtgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                            <  2:215817‑M2/34‑1 (MQ=255)
                                gcgctgatatggtttcatgccttagctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCACTGATGCGCCAGCCTTCgg                                                                                                           >  2:924230‑M2/109‑143 (MQ=255)
                                  gctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatccgtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACATACATGCTGCGCCCGCCCTCGgtg                                                                                                         >  2:267292‑M2/107‑142 (MQ=255)
                                             atactgcctcctctcctcatcttccttttcgacacacaaaaaaaacgcgactcatcattcgcctgaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                                                              <  2:799388‑M2/48‑1 (MQ=255)
                                              tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                             <  1:99171‑M2/49‑1 (MQ=255)
                                                 tgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCCGTCCTCCCTACGTtcacg                                                                                          >  2:923525‑M2/92‑141 (MQ=255)
                                                   ccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTCCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGTc                                                                                        >  1:684869‑M2/90‑143 (MQ=255)
                                                    cttctctcctcatctgacttcgctacagacgaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                       <  2:872412‑M2/55‑1 (MQ=255)
                                                       cgctcctcatcttacttttctacagacaaaaaaaaggcgactcataagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                                                                    >  1:840227‑M2/86‑143 (MQ=255)
                                                           cctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgtGGTGTGCCAGACGCCAATGATGCGCCCGTCTTCGGTAATCACTACGTTAATGTCGGGCTATg                                                                                >  1:428436‑M2/82‑143 (MQ=255)
                                                            ctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATCTCGGTCTCTGc                                                                               >  2:203927‑M2/81‑143 (MQ=255)
                                                                tcttacttttaaacggaaagaaaaaaggcgactcatcagtcgccttaaaaatcggtttgccagcgccgccttctgcCGTCCCCCGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                           <  1:326653‑M2/67‑1 (MQ=255)
                                                                 ctcccttttctacagacaaaaaaaaggcgactcaccagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCag                                                                          <  1:293500‑M2/68‑1 (MQ=255)
                                                                  tactgttctacagacaaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                         <  1:571508‑M2/69‑1 (MQ=255)
                                                                    acttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGGACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCCGAGt                                                                       >  2:108322‑M2/73‑143 (MQ=255)
                                                                         tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa                                                                  <  2:840227‑M2/76‑1 (MQ=255)
                                                                              agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCTGTCTCTGCGGCAGAGTCTTCAACGTa                                                             >  1:20251‑M2/63‑143 (MQ=255)
                                                                              agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccctctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGCCATCACTACGTTCGTGGCGGCCACGGCCGCAGGGTCTTCAccgga                                                             >  2:144810‑M2/63‑141 (MQ=255)
                                                                                       aaaggcgtctcatcagtcgccttaaaaatcagtttgccagcgccgctttctgtCGATCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc                                                    <  1:834130‑M2/90‑1 (MQ=255)
                                                                                                   tcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTc                                        >  1:69304‑M2/42‑143 (MQ=255)
                                                                                                      gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGcc                                     >  1:75232‑M2/39‑143 (MQ=255)
                                                                                                            ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTcac                               >  1:917196‑M2/33‑143 (MQ=255)
                                                                                                            tgaaaaaccaggttgccgtcgccgccttctgcCGTCCCCTGCACTTCCATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTcac                               <  2:774733‑M2/111‑1 (MQ=255)
                                                                                                            cgaaaaatccgtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCCGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTcac                               <  2:592785‑M2/111‑1 (MQ=255)
                                                                                                             taaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTGAGCCGTTccca                              >  2:140278‑M2/32‑143 (MQ=255)
                                                                                                                aaatccgtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCTGCAGAGTTTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAAtt                           <  1:535296‑M2/115‑1 (MQ=255)
                                                                                                                 aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTc                          <  1:828453‑M2/116‑1 (MQ=255)
                                                                                                                    cagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGa                       <  1:564674‑M2/119‑1 (MQ=255)
                                                                                                                     agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATAGCAAACCGCTTCGCCGTTCTCAATTACGAc                      >  1:47039‑M2/24‑143 (MQ=255)
                                                                                                                     agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTGCGGTCATCACTACGTTCAGGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc                      <  1:374499‑M2/120‑1 (MQ=255)
                                                                                                                      gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATCCCAGATCTCAAACCGCTTCGCCGTTCACAATTCCGTCa                     >  1:368057‑M2/23‑143 (MQ=255)
                                                                                                                       tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAg                    >  1:736888‑M2/22‑143 (MQ=255)
                                                                                                                       tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGCATTCCAGATCGCAAACCGCCTCGCCGTTCCCAACTCCgaccg                    >  2:234604‑M2/22‑141 (MQ=255)
                                                                                                                       tttgccagcgccGCCTTCTGCCGTCCCCTGCACTTCACTGATGCGCCCGTCTTCGGTCATACCAAAGTACATTTCGGTCTCTGCGGCAGCCCCTTCAACGTATTCCACATCCCCAACCGCCTCGCCGCCCACACTCCCCACAg                    >  2:862441/12‑143 (MQ=255)
                                                                                                                            cagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGCTGGTGTCTGCGGCAGAGGCTTCAGCGTATTGCAGATCGCAAACCGCTTCGGCgtgcacagttccactggcaact               >  2:931720‑M2/17‑133 (MQ=255)
                                                                                                                              gcgccgacttctgcCGTCCCATGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCTAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGc             <  2:238404‑M2/129‑1 (MQ=255)
                                                                                                                                  cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACCATTCCGACAGAACCTGCGGCt         >  2:587790‑M2/11‑143 (MQ=255)
                                                                                                                                    ccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGCTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGCATTCCAGATCGCAAACCGCTTCGCCGTTGCCAATTCCGCCAGAACATGCGgctgc       >  1:302752‑M2/9‑141 (MQ=255)
                                                                                                                                      ttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa     >  1:453660‑M2/7‑143 (MQ=255)
                                                                                                                                         tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc  <  2:741915‑M2/140‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                           
AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815800‑3816079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: