| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,756,138 | Δ1 bp | intergenic (+183/‑21) | ssrA → / → intA | tmRNA/CP4‑57 prophage; integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,756,137 | 0 | C | . | 98.4% | 286.9 / ‑1.8 | 63 | intergenic (+182/‑22) | ssrA/intA | tmRNA/CP4‑57 prophage; integrase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base . (29/33); total (29/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAA > NC_000913/2756103‑2756165 | aGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGc > 1:6464109/1‑35 (MQ=255)aGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGc < 1:3028392/35‑1 (MQ=255) ggCCCAACGAAAAGCTCTATTGTTTACGTTGGGct > 1:4072998/1‑34 (MQ=255) cccAACGAAAAGCTCTATTGTTTACGTTGGGCCTa < 1:21117/35‑1 (MQ=255) cAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAAc < 1:5554666/35‑1 (MQ=38) cAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAAc < 1:3994589/35‑1 (MQ=38) aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACg < 1:5702252/35‑1 (MQ=38) aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACg < 1:6897843/35‑1 (MQ=38) aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGc > 1:3532443/1‑35 (MQ=38) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCa > 1:22900/1‑35 (MQ=38) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCa > 1:3440743/1‑35 (MQ=38) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAg > 1:7163316/1‑35 (MQ=38) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAg < 1:6708253/35‑1 (MQ=38) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg > 1:3470847/1‑35 (MQ=38) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg < 1:3458340/35‑1 (MQ=38) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg > 1:6254666/1‑35 (MQ=38) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg > 1:5671070/1‑35 (MQ=38) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg < 1:6655517/35‑1 (MQ=38) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg > 1:7191728/1‑35 (MQ=38) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAggg > 1:6641884/1‑35 (MQ=38) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAggg > 1:2237433/1‑35 (MQ=38) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAggg > 1:7738162/1‑35 (MQ=38) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAggg > 1:5594346/1‑35 (MQ=38) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAggg > 1:820872/1‑35 (MQ=38) aaaGCTCCATTGTTTACGTTGGG‑CTAAACGCAggg > 1:6392150/1‑35 (MQ=25) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGga > 1:5821559/1‑35 (MQ=38) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGga < 1:7334261/35‑1 (MQ=38) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGga > 1:7437888/1‑35 (MQ=38) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGgag > 1:539053/1‑35 (MQ=38) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGgag > 1:5662128/1‑35 (MQ=38) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGgag > 1:4468827/1‑35 (MQ=38) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGgaga < 1:2662085/35‑1 (MQ=38) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGgaga < 1:4544512/35‑1 (MQ=38) ctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTc > 1:6622273/1‑35 (MQ=38) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTcc > 1:3600057/1‑35 (MQ=38) aTTGTTTACGTTGGG‑CTAAACGCAGGGAGACTccc < 1:6248019/35‑1 (MQ=38) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTcccc < 1:7078055/35‑1 (MQ=38) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTcccc < 1:164904/35‑1 (MQ=38) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTcccc > 1:5472525/1‑35 (MQ=38) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTcccc < 1:3416270/35‑1 (MQ=38) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTcccc < 1:5153791/35‑1 (MQ=38) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTcccc < 1:731672/35‑1 (MQ=38) tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:5038894‑M1/35‑1 (MQ=255) tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:4517438‑M1/35‑1 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:5188291‑M1/35‑2 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:7889841‑M1/35‑2 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:5524957‑M1/35‑2 (MQ=255) tttACGTTGGG‑CTAAACGCAGTGAGACTCCCCAcc > 1:2450369‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:5900939‑M1/35‑3 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:3587960‑M1/35‑3 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:3506016‑M1/35‑3 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc > 1:6803093‑M1/1‑33 (MQ=255) ttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:1519758‑M1/1‑32 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 1:2095215‑M1/35‑5 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:7361378‑M1/1‑31 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:5312253‑M1/1‑31 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:7061829‑M1/35‑6 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:3465330‑M1/35‑6 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:4042105‑M1/35‑6 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:5313097‑M1/1‑30 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg > 1:3314158‑M1/1‑29 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:2397150‑M1/35‑7 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:6471714‑M1/35‑7 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:1952363‑M1/35‑7 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:1814632‑M1/35‑7 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:5641922‑M1/35‑7 (MQ=255) | AGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAA > NC_000913/2756103‑2756165 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |