| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 68 [0] | [0] 65 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 62 (0.880) | 29/66 | 0.2 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15354‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTT > NC_000913/20564‑20597 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:5218505/35‑1ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:6929889/35‑1ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:6310190/35‑1ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:1658843/35‑1ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:7358095/35‑1 TATGCGAGCACCTGTAAAGTGGCGGGGGTAACTCT > 1:7416869/1‑35 ATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTA > 1:3391780/1‑35 TGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTAC > 1:7081101/1‑35 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC > 1:6625678/1‑35 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC > 1:5378708/1‑35 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC > 1:7600130/1‑35 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC > 1:2754168/1‑35 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC > 1:7378911/1‑35 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCc > 1:73045/1‑34 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:6651755/35‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:6679038/35‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:6224491/35‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:1206589/35‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:833755/35‑1 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA > 1:2089944/1‑35 GCACCTGTAAAGTGGCGGGGATCACTCTACCTCAA < 1:6825850/35‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:2854628/35‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:4470088/35‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:1790534/35‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:6363809/35‑1 CTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:513003/35‑1 TGTAAAGTGGCGGGGATCACTCTACCTCAATGTGg > 1:7361816/1‑34 TGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:1860287/35‑1 GTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:7538503/35‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT > 1:6268798/1‑35 AAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:4483747/35‑1 AAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:3903820/35‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:6435340/35‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:872476/35‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:2999643/35‑1 AGTGGCGGGGATCACTGTACCTCAATGTGTATCAC < 1:7150169/35‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:5152442/35‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:1921346/35‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAA < 1:6530301/35‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAA > 1:1477467/1‑35 TGGCGGGGATCACTCTACCTCAATGTGTATCACAA < 1:2934681/35‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATA > 1:4917616/1‑35 GCGGGGATCACTCTACCTCAATGTGTATCACAATA > 1:4645177/1‑35 GCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:1829653/35‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:460831/35‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATA > 1:338605/1‑35 GCGGGGATCACTCTACCTCAATGTGTATCACAATA > 1:5989162/1‑35 GGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:111671/35‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:5959336/35‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:6782219/35‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:7022273/35‑1 GGGATCACTCTACCTCAATGTGTATCACAATATCC > 1:7276272/1‑35 GGGATCACTCTACCTCAATGTGTATCACAATATCC > 1:7500558/1‑35 GGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:5832477/35‑1 GATCACTCTACCTCAATGTGTATCACAATATCCAT < 1:2789994/35‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATA > 1:6927159/1‑35 ATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:1535297/35‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTC > 1:5569617/1‑35 ACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:657069/35‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:3103472/35‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTC > 1:2951915/1‑35 ACTCTACCTCAATGTGTATCACAATATCCATATTC > 1:1436268/1‑35 TCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:6127735/35‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:4358761/35‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:430290/35‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:2301049/35‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:2025811/35‑1 CTACCTCAATGTGTATCACAATATCCATATTCTTT > 1:94324/1‑35 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15354‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTT > NC_000913/20564‑20597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |