| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 87 [0] | [0] 88 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 81 (1.150) | 42/66 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
TTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871995‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGT > NC_000913/1873467‑1873500 TTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG < 1:1255792/35‑1 TTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGA > 1:6186550/1‑35 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT < 1:271423/35‑1 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT > 1:1322166/1‑35 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT > 1:839715/1‑35 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT < 1:858987/35‑1 ATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATG > 1:3928767/1‑35 TCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC > 1:687632/1‑35 TCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC < 1:3036626/35‑1 TCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC > 1:1557289/1‑35 CTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCG < 1:5956589/35‑1 TGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGT < 1:4083701/35‑1 GGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTA < 1:7027036/35‑1 GGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTA < 1:5283044/35‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT < 1:4361525/35‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT > 1:1443727/1‑35 TTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA < 1:7287664/35‑1 TTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:519659/1‑35 TTTCTCGTTTCACTAACCGAAGGAGATGCGTATAA < 1:7013282/35‑1 TTTCTCGTTTCACTAACCGAAGGAGATGCGTATAA < 1:6804709/35‑1 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAA > 1:6236986/1‑35 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAA > 1:1732977/1‑35 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAA > 1:890861/1‑35 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAA > 1:7774179/1‑35 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAG > 1:5584671/1‑35 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAG > 1:3256628/1‑35 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAG < 1:821988/35‑1 TCGTTTCACTAACCGAAGGAGATGCGTATAAAGCT > 1:7729914/1‑35 CGTTTCACTAACCGAAGGAGATGCGTATAAAGCTT < 1:177084/35‑1 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC > 1:3521433/1‑35 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC < 1:2249449/35‑1 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC < 1:2298441/35‑1 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC > 1:2105258/1‑35 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC > 1:3455636/1‑35 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC < 1:2849941/35‑1 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC > 1:5556703/1‑35 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC > 1:6276274/1‑35 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC < 1:2144296/35‑1 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC > 1:1696094/1‑35 TTCACTAACCGAAGGAGATGCGTATAAAGCTTCCG > 1:5603015/1‑35 TTCACTAACCGAAGGAGATGCGTATAAAGCTTCCG > 1:4296437/1‑35 TTCACTAACCGAAGGAGATGCGTATAAAGCTTCCG > 1:1329596/1‑35 TTCACTAACCGAAGGAGATGCGTATAAAGCTTCCG > 1:1950818/1‑35 TCACTAACCGAAGGAGATGCGTATAAAGCTTCCGA > 1:6986247/1‑35 TCACTAACCGAAGGAGATGCGTATAAAGCTTCCGA > 1:6256128/1‑35 TCACTAACCGAAGGAGATGCGTATAAAGCTTCCGA < 1:7435904/35‑1 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT < 1:2789181/35‑1 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT > 1:2380463/1‑35 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT < 1:2311753/35‑1 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT < 1:2680496/35‑1 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATG > 1:377558/1‑35 TAACCGAAGGAGATGCGTATAAAGCTTCCGATGAG < 1:5601011/35‑1 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG > 1:3531127/1‑35 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG > 1:4111820/1‑35 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG > 1:2155840/1‑35 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG > 1:2930316/1‑35 CCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGT < 1:446016/35‑1 CCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGT < 1:5796969/35‑1 CGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT < 1:7676638/35‑1 CGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT < 1:4618676/35‑1 CGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT < 1:4607234/35‑1 CGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT < 1:775640/35‑1 CGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT > 1:3078051/1‑35 GAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTT < 1:5637506/35‑1 GAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTT < 1:6921942/35‑1 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA > 1:7600142/1‑35 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA < 1:6973692/35‑1 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA < 1:942373/35‑1 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA > 1:6504559/1‑35 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA > 1:4272765/1‑35 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA < 1:4516283/35‑1 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA < 1:4884888/35‑1 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTAT > 1:2264011/1‑35 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTAT > 1:604884/1‑35 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTAT < 1:5997526/35‑1 GGAGATGCGTATAAAGCTTCCGATGAGCGTTTATA < 1:1049015/35‑1 GGAGATGCGTATAAAGCTTCCGATGAGCGTTTATA < 1:5377362/35‑1 GGAGATGCGTATAAAGCTTCCGATGAGCGTTTATA < 1:7133191/35‑1 GAGATGCGTATAAAGCTTCCGATGAGCGTTTATAT > 1:4994127/1‑35 GAGATGCGTATAAAGCTTCCGATGAGCGTTTATAT > 1:2947531/1‑35 AGATGCGTATAAAGCTTCCGATGAGCGTTTATATG > 1:6478097/1‑35 AGATGCGTATAAAGCTTCCGATGAGCGTTTATATG > 1:1082509/1‑35 GATGCGTATAAAGCTTCCGATGAGCGTTTATATGT > 1:5122929/1‑35 GATGCGTATAAAGCTTCCGATGAGCGTTTATATGT < 1:4365636/35‑1 GATGCGTATAAAGCTTCCGATGAGCGTTTATATGT < 1:5571300/35‑1 GATGCGTATAAAGCTTCCGATGAGCGTTTATATGT < 1:6724747/35‑1 GATGCGTATAAACCTTCCGATGAGCGTTTATATGc > 1:3779798/1‑34 TTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871995‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGT > NC_000913/1873467‑1873500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |