| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 109 [0] | [0] 112 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 104 (1.440) | 53/68 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 104 total aligned reads displayed.
GGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2466511‑2466544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTG > NC_000913/2476179‑2476212 GGATAAAATAATTTTACCCACCGGATTTTTACCCT > 1:3148935/1‑35 GATAAAATAATTTTACCCACCGGATTTTTACCCTA > 1:3887433/1‑35 GATAAAATAATTTTACCCACCGGATTTTTACCCTA > 1:3703059/1‑35 GATAAAATAATTTTACCCACCGGATTTTTACCCTA > 1:1375918/1‑35 GATAAAATAATTTTACCCACCGGATTTTTACCCTA > 1:2336472/1‑35 GATAAAATAATTTTACCCACCGGAATTTTACCCTA > 1:3800515/1‑35 ATAAAATAATTTTACCCACCGGATTTTTACCCTAG > 1:80496/1‑35 ATAAAATAATTTTACCCACCGGATTTTTACCCTAG < 1:547147/35‑1 ATAAAATAATTTTACCCACCGGATTTTTACCCTAG < 1:3116407/35‑1 ATAAAATAATTTTACCCACCGGATTTTTACCCTAG > 1:1677864/1‑35 ATAAAATAATTTTACCCACCGGATTTTTACCCTAG > 1:1563632/1‑35 TAAAATAATTTTACCCACCGGATTTTTACCCTAGA > 1:5189377/1‑35 TAAAATAATTTTACCCACCGGATTTTTACCCTAGA < 1:2848950/35‑1 AAAATAATTTTCCCCACCGGATTTTTACCCTAGAG < 1:4006463/35‑1 AAAATAATTTTACCCACCGGATTTTTACCCTAGAG < 1:4113871/35‑1 AAAATAATTTTACCCACCGGATTTTTACCCTAGAG < 1:1796074/35‑1 AAATAATTTTACCCACCGGATTTTTACCCTAGAGC > 1:4602711/1‑35 AAATAATTTTACCCACCGGATTTTTACCCTAGAGC > 1:360851/1‑35 AAATAATTTTACCCACCGGATTTTTACCCTAGAGC > 1:714444/1‑35 AAATAATTTTACCCACCGGATTTTTACCCTAGAGC > 1:7335778/1‑35 AAATAATTTTACCCACCGGATTTTTACCCTAGAGC < 1:1482409/35‑1 AATAATTTTACCCACCGGATTTTTACCCTAGAGCC > 1:7516453/1‑35 ATAATTTTACCCACCGGATTTTTACCCTAGAGCCA > 1:4948561/1‑35 ATAATTTTACCCACCGGATTTTTACCCTAGAGCCA < 1:3819738/35‑1 ATAATTTTACCCACCGGATTTTTACCCTAGAGCCA > 1:1254171/1‑35 ATAATTTTACCCACCGGATTTTTACCCTAGAGCCA < 1:7732635/35‑1 TAATTTTACCCACCGGATTTTTACCCTAGAGCCAT > 1:7000037/1‑35 TAATTTTACCCACCGGATTTTTACCCTAGAGCCAT > 1:1152611/1‑35 TAATTTTACCCACCGGATTTTTACCCTAGAGCCAT < 1:4582552/35‑1 TAATTTTACCCACCGGATTTTTACCCTAGAGCCAT > 1:6325799/1‑35 TAATTTTACCCACCGGATTTTTACCCTAGAGCCAT < 1:1271378/35‑1 TAATTTTACCCACCGGATTTTTACCCTAGAGCCAT < 1:170845/35‑1 TAATTTTACCCACCGGATTTTTACCCTAGAGCCAT < 1:7764516/35‑1 TAATTTTACCCACCGGATTTTTACCCTAGAGCCAT < 1:2458481/35‑1 AATTTTACCCACCGGATTTTTACCCTAGAGCCATA < 1:5532550/35‑1 AATTTTACCCACCGGATTTTTACCCTAGAGCCATA < 1:5980863/35‑1 AATTTTACCCACCGGATTTTTACCCTAGAGCCATA < 1:6288656/35‑1 ATTTTACCCACCGGATTTTTACCCTAGAGCCATAC < 1:1516024/35‑1 ATTTTACCCACCGGATTTTTACCCTAGAGCCATAC > 1:4562359/1‑35 ATTTTACCCACCGGATTTTTACCCTAGAGCCATAC > 1:5731655/1‑35 TTTTACCCACCGGATTTTTACCCTAGAGCCATACA > 1:7224165/1‑35 TTTTACCCACCGGATTTTTACCCTAGAGCCATACA < 1:4211208/35‑1 TTTACCCACCGGATTTTTACCCTAGAGCCATACAG > 1:5407019/1‑35 TTTACCCACCGGATTTTTACCCTAGAGCCATACAG < 1:1541574/35‑1 TTTACCCACCGGATTTTTACCCTAGAGCCATACAG > 1:3985429/1‑35 TTTACCCACCGGATTTTTACCCTAGAGCCATACAG > 1:4290851/1‑35 TTACCCACCGGATTTTTACCCTAGAGCCATACAGC < 1:2189684/35‑1 TTACCCACCGGATTTTTACCCTAGAGCCATACAGC > 1:1290306/1‑35 TTACCCACCGGATTTTTACCCTAGAGCCATACAGC < 1:2473041/35‑1 TTACCCACCGGATTTTTACCCTAGAGCCATACAGC > 1:3404754/1‑35 TTACCCACCGGATTTTTACCCTAGAGCCATACAGC > 1:5615775/1‑35 TACCCACCGGATTTTTACCCTAGAGCCATACAGCC > 1:6959921/1‑35 TACCCACCGGATTTTTACCCTAGAGCCATACAGCC > 1:1142659/1‑35 TACCCACCGGATTTTTACCCTAGAGCCATACAGCC > 1:3362939/1‑35 TACCCACCGGATTTTTACCCTAGAGCCATACAGCC < 1:1988450/35‑1 TACCCACCGGATTTTTACCCTAGAGCCATACAGCC > 1:6985574/1‑35 ACCCACCGGATTTTTACCCTAGAGCCATACAGCCT > 1:5663538/1‑35 ACCCACCGGATTTTTACCCTAGAGCCATACAGCCT < 1:2171136/35‑1 CCCACCGGATTTTTACCCTAGAGCCATACAGCCTC > 1:3326758/1‑35 CCACCGGATTTTTACCCTAGAGCCATACAGCCTCA > 1:5364326/1‑35 CACCGGATTTTTACCCTAGAGCCATACAGCCTCAC < 1:7220427/35‑1 CACCGGATTTTTACCCTAGAGCCATACAGCCTCAC < 1:2592724/35‑1 ACCGGATTTTTACCCTAGAGCCATACAGCCTCACA > 1:1361399/1‑35 CCGGATTTTTACCCTAGAGCCATACAGCCTCACAC > 1:1077157/1‑35 CCGGATTTTTACCCTAGAGCCATACAGCCTCACAC > 1:7753428/1‑35 CCGGATTTTTACCCTAGAGCCATACAGCCTCACAC < 1:3625794/35‑1 CGGATTTTTACCCTAGAGCCATACAGCCTCACACT < 1:6194559/35‑1 GGATTTTTACCCTAGAGCCATACAGCCTCACACTC < 1:3512831/35‑1 GATTTTTACCCTAGAGCCATACAGCCTCACACTCG > 1:4303965/1‑35 GATTTTTACCCTAGAGCCATACAGCCTCACACTCG > 1:4303926/1‑35 GATTTTTACCCTAGAGCCATACAGCCTCACACTCG > 1:6118961/1‑35 GATTTTTACCCTAGAGCCATACAGCCTCACACTCG > 1:6384253/1‑35 ATTTTTACCCTAGAGCCATACAGCCTCACACTCGA < 1:4373983/35‑1 ATTTTTACCCTAGAGCCATACAGCCTCACACTCGA > 1:4205858/1‑35 ATTTTTACCCTAGAGCCATACAGCCTCACACTCGA < 1:6651191/35‑1 ATTTTTACCCTAGAGCCATACAGCCTCACACTCGA > 1:7586637/1‑35 TTTTTACCCTAGAGCCATACAGCCTCACACTCGAT < 1:2952175/35‑1 TTTTTACCCTAGAGCCATACAGCCTCACACTCGAT > 1:6896539/1‑35 TTTTTACCCTAGAGCCATACAGCCTCACACTCGAT < 1:7326092/35‑1 TTTTTACCCTAGAGCCATACAGCCTCACACTCGAT < 1:2322970/35‑1 TTTTACCCTAGAGCCATACAGCCTCACACTCGATG > 1:1027956/1‑35 TTTACCCTAGAGCCATACAGCCTCACACTCGATGA < 1:3261166/35‑1 TTTACCCTAGAGCCATACAGCCTCACACTCGATGA > 1:4567268/1‑35 TTACCCTAGAGCCATACAGCCTCACACTCGATGAG > 1:7283882/1‑35 TTACCCTAGAGCCATACAGCCTCACACTCGATGAG < 1:7802636/35‑1 TTACCCTAGAGCCATACAGCCTCACACTCGATGAG > 1:1799193/1‑35 TTACCCTAGAGCCATACAGCCTCACACTCGATGAG > 1:6840547/1‑35 TACCCTAGAGCCATACAGCCTCACACTCGATGAGG < 1:2960538/35‑1 TACCCTAGAGCCATACAGCCTCACACTCGATGAGG > 1:1820864/1‑35 TACCCTAGAGCCATACAGCCTCACACTCGATGAGG > 1:4799926/1‑35 ACCCTAGAGCCATACAGCCTCACACTCGATGAGGC > 1:7321324/1‑35 ACCCTAGAGCCATACAGCCTCACACTCGATGAGGC > 1:2431625/1‑35 ACCCTAGAGCCATACAGCCTCACACTCGATGAGGC > 1:1227493/1‑35 CCCTAGAGCCATACAGCCTCACACTCGATGAGGCC > 1:3445658/1‑35 CCCTAGAGCCATACAGCCTCACACTCGATGAGGCC > 1:1499546/1‑35 CCTAGAGCCATACAGCCTCACACTCGATGAGGCCT < 1:1242920/35‑1 CCTAGAGCCATACAGCCTCACACTCGATGAGGCCT < 1:2925117/35‑1 CCTAGAGCCATACAGCCTCACACTCGATGAGGCCT > 1:5135702/1‑35 CTAGAGCCATACAGCCTCACACTCGATGAGGCCTG > 1:74286/1‑35 CTAGAGCCATACAGCCTCACACTCGATGAGGCCTG > 1:5758973/1‑35 GGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2466511‑2466544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTG > NC_000913/2476179‑2476212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |