| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 112 [0] | [0] 111 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 111 (1.580) | 54/66 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
Only 100 of 112 total aligned reads displayed.
CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761958‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCT > NC_000913/3770243‑3770275 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC < 1:7387678/35‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCT < 1:3891824/35‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCT < 1:300349/35‑1 GTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCA > 1:1456676/1‑35 GTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCA < 1:6627280/35‑1 TCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAA < 1:4123737/35‑1 TCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAA < 1:6374624/35‑1 TCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAA < 1:7018983/35‑1 TCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAA < 1:4154431/35‑1 CCTTTGTGCGAGGAAAAATATCAGTATGGCTCAAT < 1:3884933/35‑1 CCTTTGTGCGAGGAAAAATATCAGTATGGCTCAAT < 1:7229478/35‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG > 1:6793900/1‑35 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG > 1:2099263/1‑35 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:5019689/35‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:4199336/35‑1 TTTGTGCGAGGAAAAATATCAGTATGGCTCAATGA < 1:1697487/35‑1 TTTGTGCGAGGAAAAATATCAGTATGGCTCAATGA > 1:7745800/1‑35 TTGTGCGAGGAAAAATATCAGTATGGCTCAATGAT < 1:1898038/35‑1 TTGTGCGAGGAAAAATATCAGTATGGCTCAATGAT > 1:370224/1‑35 TTGTGCGAGGAAAAATATCAGTATGGCTCAATGAT < 1:7758745/35‑1 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATC < 1:1202619/35‑1 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATC < 1:2102224/35‑1 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATC < 1:3277353/35‑1 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATC < 1:4902347/35‑1 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATC < 1:3854583/35‑1 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCC > 1:3532291/1‑35 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCC < 1:1125295/35‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCA < 1:5303499/35‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCA < 1:3447109/35‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCA < 1:5878717/35‑1 GCGAGGAAAAATATCAGTATGGCTCAATGATCCAA < 1:1839019/35‑1 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAA > 1:2286144/1‑35 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAA < 1:2215536/35‑1 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAA < 1:2014398/35‑1 GAGGAAAAATATCAGTATGGCTCAATGATCCAAAT < 1:2913636/35‑1 GAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:1207049/1‑35 GAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:7773178/1‑35 AGGAAAAATATCAGTATGGCTCAATGATCCAAATA > 1:4757441/1‑35 AGGAAAAATATCAGTATGGCTCAATGATCCAAATA < 1:1406224/35‑1 GGAAAAATATCAGTATGGCTCAATGATCCAAATAA < 1:1232918/35‑1 GAAAAATATCAGTATGGCTCAATGATCCAAATAAA > 1:1908179/1‑35 GAAAAATATCAGTATGGCTCAATGATCCAAATAAA < 1:4326105/35‑1 AAAAATATCAGTATGGCTCAATGATCCAAATAAAG > 1:6805413/1‑35 AAAAATATCAGTATGGCTCAATGATCCAAATAAAG < 1:2216979/35‑1 AAAAATATCAGTATGGCTCAATGATCCAAATAAAG > 1:4474137/1‑35 AAAAATATCAGTATGGCTCAATGAGCCAAATAAAG > 1:4990389/1‑35 AAAATATCAGTATGGCTCAATGATCCAAATAAAGA < 1:817124/35‑1 AAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:7795219/1‑35 AAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:7775329/1‑35 AAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:2049651/1‑35 AAAATATCAGTATGGCTCAATGATCCAAATAAAGA < 1:2990854/35‑1 AAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:7340008/1‑35 AAATATCAGTATGGCTCAATGATCCAAATAAAGAT > 1:6417292/1‑35 AAATATCAGTATGGCTCAATGATCCAAATAAAGAT < 1:6104952/35‑1 AATATCAGTATGGCTCAATGATCCAAATAAAGATA > 1:4409982/1‑35 ATATCAGTATGGCTCAATGATCCAAATAAAGATAA < 1:3969565/35‑1 ATATCAGTATGGCTCAATGATCCAAATAAAGATAA > 1:5590072/1‑35 ATATCAGTATGGCTCAATGATCCAAATAAAGATAA > 1:2661305/1‑35 ATATCAGTATGGCTCAATGATCCAAATAAAGATAA < 1:7413734/35‑1 TATCAGTATGGCTCAATGATCCAAATAAAGATAAT < 1:2755429/35‑1 TATCAGTATGGCTCAATGATCCAAATAAAGATAAT < 1:45795/35‑1 TATCAGTATGGCTCAATGATCCAAATAAAGATAAT > 1:4167635/1‑35 TATCAGTATGGCTCAATGATCCAAATAAAGATAAT > 1:4942548/1‑35 TATCAGTATGGCTCAATGATCCAAATAAAGATAAT < 1:6462498/35‑1 ATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:4316405/1‑35 ATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:722590/1‑35 ATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:6610839/1‑35 ATCAGTATGGCTCAATGATCCAAATAAAGATAATG < 1:1170477/35‑1 ATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:578842/1‑35 TCAGTATGGCTCAATGATCCAAATAAAGATAATGC > 1:1068741/1‑35 TCAGTATGGCTCAATGATCCAAATAAAGATAATGC > 1:1018166/1‑35 TCAGTATGGCTCAATGATCCAAATAAAGATAATGC < 1:4541078/35‑1 TCAGTATGGCTCAATGATCCAAATAAAGATAATGC > 1:2848036/1‑35 CAGTATGGCTCAATGATCCAAATAAAGATAATGCA > 1:2066606/1‑35 AGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:781591/35‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:4603690/35‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:6255611/35‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCAT > 1:2091508/1‑35 AGTATGGCTCAATGATCCAAATAAAGATAATGCAT > 1:3204607/1‑35 GTATGGCTCAATGATCCAAATAAAGATAATGCATC < 1:703018/35‑1 GTATGGCTCAATGATCCAAATAAAGATAATGCATC < 1:959255/35‑1 GTATGGCTCAATGATCCAAATAAAGATAATGCATC < 1:1727960/35‑1 GTATGGCTCAATGATCCAAATAAAGATAATGCATC < 1:312720/35‑1 GTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:5457371/1‑35 GTATGGCTCAATGATCCAAATAAAGATAATGCATC < 1:3539610/35‑1 GTATGGCTCAATGATCCAAATAAAGATAATGCATC < 1:3759105/35‑1 GTATGGCTCAATGATCCAAATAAAGATAATGCATC < 1:3889405/35‑1 TATGGCTCAATGATCCAAATAAAGATAATGCATCC > 1:6510696/1‑35 TATGGCTCAATGATCCAAATAAAGATAATGCATCC > 1:1834304/1‑35 ATGGCTCAATGATCCAAATAAAGATAATGCATCCA < 1:3001979/35‑1 ATGGCTCAATGATCCAAATAAAGATAATGCATCCA < 1:2851039/35‑1 ATGGCTCAATGATCCAAATAAAGATAATGCATCCA > 1:3855718/1‑35 ATGGCTCAATGATCCAAATAAAGATAATGCATCCA < 1:4619444/35‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAG > 1:1634544/1‑35 TGGCTCAATGATCCAAATAAAGATAATGCATCCAG > 1:6013002/1‑35 TGGCTCAATGATCCAAATAAAGATAATGCATCCAG > 1:5203697/1‑35 GGCTCAATGATCCAAATAAAGATAATGCATCCAGC < 1:3749223/35‑1 GGCTCAATGATCCAAATAAAGATAATGCATCCAGC > 1:7384215/1‑35 GGCTCAATGATCCAAATAAAGATAATGCATCCAGC > 1:3992658/1‑35 GCTCAATGATCCAAATAAAGATAATGCATCCAGCT > 1:2822729/1‑35 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761958‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCT > NC_000913/3770243‑3770275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |