| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2725836 | 136 (1.880) | 6 (0.110) | 5/52 | 3.2 | 5.6% | intergenic (‑90/+233) | kgtP/rrfG | alpha‑ketoglutarate:H(+) symporter/5S ribosomal RNA |
| ? | NC_000913 | = 2725840 | 99 (1.790) | intergenic (‑94/+229) | kgtP/rrfG | alpha‑ketoglutarate:H(+) symporter/5S ribosomal RNA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 131 total aligned reads displayed.
TGTAAAGGAAATATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGA > NC_000913/2725806‑2725874 | tGTAAAGGAAATATTATACATTTGTTGCATATCAt < 1:5374660/35‑1 (MQ=255)tGTAAAGGAAATATTATACATTTGTTGCATATCAt > 1:929201/1‑35 (MQ=255)tGTAAAGGAAATATTATACATTTGTTGCATATCAt < 1:1283760/35‑1 (MQ=255)tGTAAAGGAAATATTATACATTTGTTGCATATCAt > 1:259176/1‑35 (MQ=255)tGTAAAGGAAATATTATACATTTGTTGCATATCAt > 1:6604903/1‑35 (MQ=255) gTAAAGGAAATATTATACATTTGTTGCATATCAtt < 1:631699/35‑1 (MQ=255) gTAAAGGAAATATTATACATTTGTTGCATATCAtt > 1:2449551/1‑35 (MQ=255) gTAAAGGAAATATTATACATTTGTTGCATATCAtt < 1:2438305/35‑1 (MQ=255) gTAAAGGAAATATTATACATTTGTTGCATATCAtt > 1:6449478/1‑35 (MQ=255) gTAAAGGAAATATTATACATTTGTTGCATATCAtt < 1:512926/35‑1 (MQ=255) gTAAAGGAAATATTATACATTTGTTGCATATCAtt > 1:4771211/1‑35 (MQ=255) gTAAAGGAAATATTATACATTTGTTGCATATCAtt > 1:1674090/1‑35 (MQ=255) gTAAAGGAAATATTATACATTTGTTGCATATCAtt > 1:4066880/1‑35 (MQ=255) tAAAGGAAATATTATACATTTGTTGCATATCATTa > 1:190298/1‑35 (MQ=255) tAAAGGAAATATTATACATTTGTTGCATATCATTa < 1:2110306/35‑1 (MQ=255) tAAAGGAAATATTATACATTTGTTGCATATCATTa > 1:4661706/1‑35 (MQ=255) aaaGGAAATATTATACATTTGTTGCATATCATTAt < 1:1921575/35‑1 (MQ=255) aaaGGAAATATTATACATTTGTTGCATATCATTAt > 1:7614681/1‑35 (MQ=255) aaaGGAAATATTATACATTTGTTGCATATCATTAt > 1:3637156/1‑35 (MQ=255) aaGGAAATATTATACATTTGTTGCATATCATTATg > 1:7475194/1‑35 (MQ=255) aaGGAAATATTATACATTTGTTGCATATCATTATg > 1:4722350/1‑35 (MQ=255) aGGAAATATTATACATTTGTTGCATATCATTATGc > 1:5336189/1‑35 (MQ=255) aGGAAATATTATACATTTGTTGCATATCATTATGc < 1:4029253/35‑1 (MQ=255) aGGAAATATTATACATTTGTTGCATATCATTATGc > 1:6545399/1‑35 (MQ=255) gAAATATTATACATTTGTTGCATATCATTATGCaa < 1:7756599/35‑1 (MQ=255) aaaTATTATACATTTGTTGCATATCATTATGCAAc > 1:3723967/1‑35 (MQ=255) aaaTATTATACATTTGTTGCATATCATTATGCAAc > 1:3017335/1‑35 (MQ=255) aaTATTATACATTTGTTGCATATCATTATGCAAcc > 1:2542913/1‑35 (MQ=255) aaTATTATACATTTGTTGCATATCATTATGCAAcc > 1:2943215/1‑35 (MQ=255) aaTATTATACATTTGTTGCATATCATTATGCAAcc > 1:961340/1‑35 (MQ=255) aaTATTATACATTTGTTGCATATCATTATGCAAcc > 1:6140925/1‑35 (MQ=255) atatTATACATTTGTTGCATATCATTATGCAACCt < 1:5886496/35‑1 (MQ=255) atatTATACATTTGTTGCATATCATTATGCAACCt > 1:1072035/1‑35 (MQ=255) atatTATACATTTGTTGCATATCATTATGCAACCt < 1:2640482/35‑1 (MQ=255) atatTATACATTTGTTGCATATCATTATGCAACCt > 1:5275054/1‑35 (MQ=255) atatTATACATTTGTTGCATATCATTATGCAACCt > 1:7684013/1‑35 (MQ=255) atatTATACATTTGTTGCATATCATTATGCAACCt < 1:7285244/35‑1 (MQ=255) tattatACATTTGTTGCATATCATTATGCAACCtt > 1:5965994/1‑35 (MQ=255) tattatACATTTGTTGCATATCATTATGCAACCtt > 1:1408622/1‑35 (MQ=255) tattatACATTTGTTGCATATCATTATGCAACCtt > 1:1476179/1‑35 (MQ=255) tattatACATTTGTTGCATATCATTATGCAACCtt < 1:3432383/35‑1 (MQ=255) attatACATTTGTTGCATATCATTATGCAACCTTa > 1:1389631/1‑35 (MQ=255) ttatACATTTGTTGCATATCATTATGCAACCTTaa > 1:4997565/1‑35 (MQ=255) ttatACATTTGTTGCATATCATTATGCAACCTTaa > 1:4324207/1‑35 (MQ=255) ttatACATTTGTTGCATATCATTATGCAACCTTaa < 1:1069879/35‑1 (MQ=255) ttatACATTTGTTGCATATCATTATGCAACCTTaa > 1:6219678/1‑35 (MQ=255) ttatACATTTGTTGCATATCATTATGCAACCTTaa > 1:6140099/1‑35 (MQ=255) ttatACATTTGTTGCATATCATTATGCAACCTTaa > 1:3932148/1‑35 (MQ=255) tataCATTTGTTGCATATCATTATGCAACCTTAAc > 1:1624089/1‑35 (MQ=255) tataCATTTGTTGCATATCATTATGCAACCTTAAc > 1:5068893/1‑35 (MQ=255) ataCATTTGTTGCATATCATTATGCAACCTTAAcc > 1:1936735/1‑35 (MQ=255) ataCATTTGTTGCATATCATTATGCAACCTTAAcc > 1:3455756/1‑35 (MQ=255) taCATTTGTTGCATATCATTATGCAACCTTAACCa > 1:1070490/1‑35 (MQ=255) taCATTTGTTGCATATCATTATGCAACCTTAACCa < 1:3177174/35‑1 (MQ=255) taCATTTGTTGCATATCATTATGCAACCTTAACCa > 1:2852578/1‑35 (MQ=255) taCATTTGTTGCATATCATTATGCAACCTTAACCa > 1:246440/1‑35 (MQ=255) taCATTTGTTGCATATCATTATGCAACCTTAACCa > 1:6528599/1‑35 (MQ=255) taCATTTGTTGCATATCATTATGCAACCTTAACCa > 1:3553623/1‑35 (MQ=255) taCATTTGTTGCATATCATTATGCAACCTTAACCa < 1:3599428/35‑1 (MQ=255) aCATTTGTTGCATATCATTATGCAACCTTAACCAt > 1:7134677/1‑35 (MQ=255) aCATTTGTTGCATATCATTATGCAACCTTAACCAt < 1:4338589/35‑1 (MQ=255) cATTTGTTGCATATCATTATGCAACCTTAACCATg > 1:1945485/1‑35 (MQ=255) cATTTGTTGCATATCATTATGCAACCTTAACCATg > 1:7016990/1‑35 (MQ=255) cATTTGTTGCATATCATTATGCAACCTTAACCATg < 1:2850036/35‑1 (MQ=255) cATTTGTTGCATATCATTATGCAACCTTAACCATg > 1:812355/1‑35 (MQ=255) cATTTGTTGCATATCATTATGCAACCTTAACCATg < 1:2988079/35‑1 (MQ=255) tttGTTGCATATCATTATGCAACCTTAACCATGaa < 1:5885345/35‑1 (MQ=255) tttGTTGCATATCATTATGCAACCTTAACCATGaa > 1:3042927/1‑35 (MQ=255) tttGTTGCATATCATTATGCAACCTTAACCATGaa > 1:1290471/1‑35 (MQ=255) tttGTTGCATATCATTATGCAACCTTAACCATGaa > 1:3538717/1‑35 (MQ=255) tgttgCATATCATTATGCAACCTTAACCATGAAtt < 1:4316791/35‑1 (MQ=255) tgttgCATATCATTATGCAACCTTAACCATGAAtt > 1:3480311/1‑35 (MQ=255) gttgCATATCATTATGCAACCTTAACCATGAAttt > 1:3146403/1‑35 (MQ=255) gttgCATATCATTATGCAACCTTAACCATGAAttt > 1:6027546/1‑35 (MQ=255) ttgCATATCATTATGCAACCTTAACCATGAATtta > 1:5668937/1‑35 (MQ=255) ttgCATATCATTATGCAACCTTAACCATGAATtta > 1:1090407/1‑35 (MQ=255) ttgCATATCATTATGCAACCTTAACCATGAATtta > 1:6370163/1‑35 (MQ=255) tgCATATCATTATGCAACCTTAACCATGAATttag > 1:211587/1‑35 (MQ=255) gCATATCATTATGCAACCTTAACCATGAATttagt < 1:6301545/35‑1 (MQ=255) gCATATCATTATGCAACCTTAACCATGAATttagt > 1:3730840/1‑35 (MQ=255) gCATATCATTATGCAACCTTAACCATGAATttagt < 1:6511566/35‑1 (MQ=255) cATATCATTATGCAACCTTAACCATGAATttagtt > 1:6966812/1‑35 (MQ=255) cATATCATTATGCAACCTTAACCATGAATttagtt > 1:2240762/1‑35 (MQ=255) atatCATTATGCAACCTTAACCATGAATttagtta > 1:4695805/1‑35 (MQ=255) atatCATTATGCAACCTTAACCATGAATttagtta > 1:1325896/1‑35 (MQ=255) tatCATTCTGCAACCTTAACCATGAATttagttag > 1:4088777/1‑35 (MQ=255) tatCATTATGCAACCTTAACCATGAATttagttag < 1:6403820/35‑1 (MQ=255) tatCATTATGCAACCTTAACCATGAATttagttag < 1:6009032/35‑1 (MQ=255) tatCATTATGCAACCTTAACCATGAATttagttag < 1:5696755/35‑1 (MQ=255) tatCATTATGCAACCTTAACCATGAATttagttag > 1:5453902/1‑35 (MQ=255) tCATTATGCAACCTTAACCATGAATTTAGTTAGCa > 1:480075/1‑35 (MQ=255) tCATTATGCAACCTTAACCATGAATTTAGTTAGCa > 1:3184728/1‑35 (MQ=255) cATTATGCAACCTTAACCATGAATTTAGTTAGCAg < 1:4881815/35‑1 (MQ=255) aTTATGCAACCTTAACCATGAATTTAGTTAGCAgg < 1:4916278/35‑1 (MQ=255) aTTATGCAACCTTAACCATGAATTTAGTTAGCAgg < 1:4595037/35‑1 (MQ=255) aTTATGCAACCTTAACCATGAATTTAGTTAGCAgg > 1:2883932/1‑35 (MQ=255) aTTATGCAACCTTAACCATGAATTTAGTTAGCAgg > 1:568868/1‑35 (MQ=255) ttATGCAACCTTAACCATGAATTTAGTTAGCAGGa < 1:6923996/35‑1 (MQ=255) ttATGCAACCTTAACCATGAATTTAGTTAGCAGGa > 1:5211382/1‑35 (MQ=255) ttATGCAACCTTAACCATGAATTTAGTTAGCAGGa > 1:1606960/1‑35 (MQ=255) | TGTAAAGGAAATATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGA > NC_000913/2725806‑2725874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |