BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	765,191	Δ1 bp	coding (685/723 nt)	mngR ←	DNA‑binding transcriptional repressor MngR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	765,189	0	T	.	100.0%	252.5 / NA	53	coding (687/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (26/27); total (26/27)

CCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765141‑765234

ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                              <  1:5351378/50‑1 (MQ=255)

ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                              <  1:2277598/50‑1 (MQ=255)

ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               >  1:5519320/1‑49 (MQ=255)

ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               >  1:4954996/1‑49 (MQ=255)

  ttttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:3241579/1‑48 (MQ=255)

     tttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        >  1:4009302/1‑50 (MQ=39)

     tttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        >  1:1858844/1‑50 (MQ=39)

      ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        <  1:5425821/49‑1 (MQ=38)

      ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        >  1:2102885/1‑49 (MQ=38)

        gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCa                                      <  1:3480250/49‑1 (MQ=38)

         tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     <  1:6264804/49‑1 (MQ=38)

         tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     <  1:3334266/49‑1 (MQ=38)

           cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg                                  >  1:2638821/1‑50 (MQ=39)

           cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg                                  <  1:4308474/50‑1 (MQ=39)

           cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   <  1:2135474/49‑1 (MQ=38)

           cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   <  1:1916552/49‑1 (MQ=38)

           cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   <  1:5642594/49‑1 (MQ=38)

             tATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                                >  1:5070676/1‑50 (MQ=39)

              aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt                                 <  1:4961141/48‑1 (MQ=38)

              aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               >  1:4324438/1‑50 (MQ=39)

              aTCGCGATGATTTTCGCTGCGCTAGCAGGGTAAA‑TTATAGTCATCGGt                                 <  1:4979264/48‑1 (MQ=37)

               tCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               <  1:5611660/49‑1 (MQ=38)

                cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:5423392‑M1/1‑50 (MQ=255)

                 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:5160425‑M1/1‑49 (MQ=255)

                 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:2774546‑M1/1‑49 (MQ=255)

                 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:3020961‑M1/1‑49 (MQ=255)

                 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:6375635‑M1/1‑49 (MQ=255)

                  cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta                           <  1:1044091‑M1/50‑3 (MQ=255)

                  cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:624480‑M1/1‑48 (MQ=255)

                   gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:407228‑M1/1‑47 (MQ=255)

                    atgatTTTAGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                         <  1:5977088‑M1/50‑5 (MQ=255)

                      gatTTTCGCTGCGCTATCAGGGCAAA‑TTATAGTCATCGGTATTAtagcaa                       >  1:6425035‑M1/1‑44 (MQ=255)

                       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      >  1:4442052‑M1/1‑43 (MQ=255)

                        ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     <  1:266286‑M1/50‑9 (MQ=255)

                        ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      >  1:187154‑M1/1‑42 (MQ=255)

                         tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     >  1:4791902‑M1/1‑41 (MQ=255)

                           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                  >  1:4702167‑M1/1‑39 (MQ=255)

                           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                  >  1:1713325‑M1/1‑39 (MQ=255)

                           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                   <  1:3944895‑M1/49‑11 (MQ=255)

                            cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                  <  1:1124958‑M1/49‑12 (MQ=255)

                            cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                  <  1:2228332‑M1/49‑12 (MQ=255)

                             gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                 <  1:4721825‑M1/49‑13 (MQ=255)

                              cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               <  1:900940‑M1/50‑15 (MQ=255)

                              cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               <  1:1009957‑M1/50‑15 (MQ=255)

                                 cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            >  1:6374676‑M1/1‑33 (MQ=255)

                                   cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcc          <  1:5395086‑M1/50‑20 (MQ=255)

                                     aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:1166587‑M1/1‑29 (MQ=255)

                                     aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:3570194‑M1/1‑29 (MQ=255)

                                      tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         <  1:3402764‑M1/48‑21 (MQ=255)

                                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     >  1:1845026‑M1/1‑26 (MQ=255)

                                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     <  1:6241648‑M1/50‑25 (MQ=255)

                                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaaacaaaccgaagcaacat      <  1:3773762‑M1/49‑24 (MQ=255)

                                          ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg   >  1:3001506‑M1/1‑24 (MQ=255)

                                          ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg   >  1:315704‑M1/1‑24 (MQ=255)

                                          ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg   <  1:3231420‑M1/50‑27 (MQ=255)

                                          ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg   <  1:3243796‑M1/50‑27 (MQ=255)

                                           gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:2015277‑M1/50‑28 (MQ=255)

                                           gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  >  1:5142836‑M1/1‑23 (MQ=255)

CCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765141‑765234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`