| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 88 [0] | [0] 89 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 82 (1.030) | 51/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATC > NC_000913/325411‑325459 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:4926664/1‑50 TTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:5150572/1‑49 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:2251348/1‑48 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAG > 1:206259/1‑50 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATA < 1:3245462/49‑1 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATA < 1:114945/49‑1 TCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGT > 1:4809146/1‑50 CTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC > 1:4165576/1‑50 CTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC > 1:4761961/1‑50 CTACCAGAAAATTCACGGCATCGGCTAGGGGGATACCGGGCTCGATAGTC > 1:5280243/1‑50 TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT > 1:2493527/1‑50 ACCAGAAAATTCACGGCATCGGCTAGGGCGATACCGGCATCGATAGTCTG > 1:1712992/1‑50 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGT < 1:3315767/50‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG < 1:1343585/49‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC < 1:5681063/47‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC < 1:287817/47‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA > 1:5818157/1‑50 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT < 1:439266/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:4800370/1‑50 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT < 1:2486234/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT < 1:1048606/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT < 1:1785721/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:5180891/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:5189799/1‑48 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:314584/1‑48 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG < 1:4917976/50‑1 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG < 1:574005/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:5142306/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:1861366/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:1111150/50‑1 ATTCGCGGCATCGGCTAGGGTGAGACAGGCATCGATAGTCTGTATCAGGA < 1:4773060/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG > 1:1716072/1‑49 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG > 1:5645425/1‑49 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG > 1:577302/1‑49 TTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAA < 1:4960184/50‑1 TTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAA > 1:721039/1‑50 TTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAA < 1:2989644/50‑1 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:1902739/49‑1 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT > 1:229544/1‑50 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATG < 1:2604081/49‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC > 1:114034/1‑50 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG < 1:6332757/50‑1 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG > 1:4916766/1‑50 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG > 1:2148871/1‑50 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG > 1:3085719/1‑50 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG < 1:2324046/50‑1 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG > 1:3861402/1‑50 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATAAGGAATGTTCGGG > 1:3878805/1‑50 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA < 1:3599670/50‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:3563446/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:2539068/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:4935929/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT < 1:2042216/49‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:5239747/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:6014572/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT < 1:3010154/49‑1 GCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAA < 1:4369909/50‑1 GCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA > 1:2893719/1‑49 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA < 1:1019632/50‑1 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA < 1:3334273/50‑1 CTAGGGTGATACCGGCATCGATAGTCTGGATCAGGAATGTTCGGGTTAAA < 1:1459581/50‑1 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:6298050/1‑49 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:2456141/1‑49 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:5280556/1‑49 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT < 1:3528914/48‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:2567300/1‑48 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG < 1:2970933/50‑1 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG > 1:1471068/1‑50 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC < 1:3072551/49‑1 TACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA < 1:1856835/50‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA < 1:544472/50‑1 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:5034467/50‑1 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:2127285/50‑1 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG < 1:5640305/50‑1 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC < 1:2281257/50‑1 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC < 1:630775/50‑1 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:5249135/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC < 1:4049923/50‑1 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG < 1:2549253/50‑1 CGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:1313315/1‑49 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA > 1:4603809/1‑50 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGC < 1:4426126/49‑1 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGC < 1:5476761/49‑1 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGC < 1:4466418/49‑1 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGC < 1:3707757/49‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:1571365/1‑50 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT < 1:2635264/50‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT < 1:3852738/50‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:3512370/1‑50 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT < 1:3097813/50‑1 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATC < 1:274730/50‑1 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATC > NC_000913/325411‑325459 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |