| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 94 [0] | [0] 92 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 89 (1.090) | 57/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040453‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 TTTACTTTGGTTCGTCGGTATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:441231/1‑49TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTC < 1:422811/50‑1TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:4743094/49‑1TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:5361822/49‑1TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:2790188/49‑1TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:5900553/49‑1 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCA < 1:5868060/49‑1 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT > 1:3832457/1‑50 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 1:4683873/49‑1 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 1:3396752/49‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT < 1:3254732/50‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:5905019/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT < 1:5349698/50‑1 TTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:3141694/1‑50 TTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:2918700/1‑50 TTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:1617141/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:1721404/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:5274874/48‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:4631627/48‑1 GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:3574277/1‑49 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:6388715/50‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:4432865/50‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT < 1:1662309/49‑1 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:3274956/1‑50 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:6077280/1‑50 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:1562375/1‑50 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT > 1:5226860/1‑50 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT > 1:693150/1‑50 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:4465110/49‑1 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:5885999/49‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATCCCT < 1:4652713/49‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 1:5174111/1‑50 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 1:5546235/1‑50 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT < 1:1996843/49‑1 TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG < 1:5505249/50‑1 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:1036783/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:1183230/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:2109905/1‑50 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:5417570/50‑1 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:3646332/1‑50 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:2219270/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:5978389/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:5385887/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:4513211/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT < 1:5498606/50‑1 ATTTTGTTAATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT < 1:5525268/50‑1 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT > 1:5163308/1‑50 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT > 1:1324922/1‑50 TTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:3369410/1‑50 TTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:2950245/1‑50 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:4910770/49‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:738332/1‑49 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:2439489/1‑49 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:6347266/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:3212471/1‑50 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:1977174/1‑50 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:5882301/1‑50 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA < 1:4198950/49‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACG < 1:1843099/50‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:1957916/49‑1 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA > 1:3951119/1‑50 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACG < 1:5903144/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:4215070/49‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:3940451/49‑1 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGA > 1:2037813/1‑50 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGA > 1:2755461/1‑50 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG < 1:3324984/50‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 1:5205196/49‑1 GTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:1838349/1‑49 GTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:2870460/1‑49 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:1947513/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:1633890/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGT < 1:2092427/49‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC < 1:2838751/50‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 1:5457431/49‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT > 1:1392586/1‑50 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT < 1:4810794/50‑1 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:6002486/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:2923732/1‑50 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:3770859/1‑50 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:6232791/1‑50 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:2897131/1‑50 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC < 1:4780236/49‑1 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA > 1:4856671/1‑50 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA < 1:1509523/50‑1 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT < 1:6143342/50‑1 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT > 1:2757257/1‑50 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT < 1:4546869/50‑1 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG < 1:2853431/50‑1 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG < 1:4495490/50‑1 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT > 1:2513547/1‑49 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT > 1:6283676/1‑49 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG > 1:4641968/1‑49 TTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > 1:1683713/1‑50 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040453‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |