| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 66 [0] | [0] 66 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 65 (0.780) | 45/98 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 AAATAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT > 1:4480350/1‑50 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:5817526/50‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC > 1:2548081/1‑50 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG > 1:5004134/1‑50 AATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC > 1:4143250/1‑50 AATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC < 1:5493168/50‑1 AATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC > 1:5281803/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 1:3244975/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 1:1336303/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:5690118/1‑50 TTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:136181/1‑49 TTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:2955268/1‑49 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT < 1:5435538/49‑1 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT > 1:3788095/1‑49 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:3957796/1‑49 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:2934466/1‑49 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA > 1:458609/1‑49 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA > 1:1287313/1‑49 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:2498639/1‑50 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:5195384/1‑50 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:5273538/1‑50 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA < 1:2985753/50‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:3924819/1‑49 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:5174491/1‑49 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:3009928/1‑49 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA > 1:5200848/1‑50 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA < 1:168498/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:4699507/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:2529490/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:820911/1‑50 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:5519052/1‑49 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:4776922/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:5857616/1‑50 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:841900/1‑49 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:4224153/1‑49 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:6098145/50‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:1502801/50‑1 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAA < 1:3620747/50‑1 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA > 1:5639426/1‑49 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC > 1:2973098/1‑50 TAACAAGGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC < 1:3599958/50‑1 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTG > 1:167680/1‑50 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:2776021/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:3864020/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:1368398/1‑50 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGT < 1:3915515/50‑1 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 1:6200416/1‑50 TCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTT > 1:6263626/1‑50 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTT < 1:496889/49‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTT < 1:3941521/49‑1 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT > 1:1890150/1‑50 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT > 1:3510091/1‑50 GCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTC < 1:1920502/50‑1 GCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTC > 1:4558412/1‑50 GCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTC > 1:114506/1‑50 TGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC > 1:5827081/1‑50 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT < 1:6261566/50‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT < 1:529174/50‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG > 1:1076206/1‑50 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG < 1:3306335/50‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG > 1:2653640/1‑50 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG < 1:1406534/50‑1 GTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGC > 1:1646505/1‑50 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > 1:1058821/1‑50 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > 1:878126/1‑50 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |