| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 91 [0] | [0] 94 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 89 (1.090) | 53/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627468‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > NC_000913/1652762‑1652810 GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:5416584/50‑1 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:1182602/50‑1 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:2945137/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:4848069/1‑50 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:2600429/1‑50 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:4332157/1‑50 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC > 1:1313066/1‑50 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:3996098/50‑1 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC > 1:6209553/1‑50 CCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:1325879/1‑50 CCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:6147648/1‑50 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:5648956/1‑49 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCA < 1:1468474/50‑1 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:3676463/1‑50 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:4814749/1‑50 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:1938904/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT > 1:289603/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT > 1:2321364/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT > 1:1407086/1‑50 GCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:2718320/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:2127296/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:5053009/1‑50 ATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:5198955/1‑49 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCt < 1:3704737/49‑2 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA < 1:290376/50‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA < 1:3577587/50‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA < 1:3514182/50‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCC < 1:5401504/49‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCC < 1:5997280/49‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCC < 1:914712/49‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCC < 1:3158572/49‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC < 1:2602335/48‑1 GTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG > 1:5812726/1‑50 TTATTGACACACAAAAGCGTTGAGGCACAGTGAGAAGCGCAGTGCCCAGC > 1:874430/1‑50 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:2711567/1‑50 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:3631265/1‑50 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC < 1:1693781/50‑1 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC < 1:1667317/50‑1 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:4056637/1‑49 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:1067421/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:1708799/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:1538495/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCC < 1:2554574/49‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT > 1:4791750/1‑50 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT > 1:2145142/1‑50 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT > 1:2019316/1‑50 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT < 1:3530620/50‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA < 1:4097983/49‑1 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:220298/1‑50 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:2290848/50‑1 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:1191376/50‑1 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 1:1827271/1‑50 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC < 1:2135904/49‑1 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 1:1115445/50‑1 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 1:3301200/50‑1 CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC > 1:2328021/1‑50 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG < 1:1512221/50‑1 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:3638600/50‑1 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:1596107/50‑1 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG > 1:2652033/1‑50 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:711702/1‑50 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:1672921/1‑50 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:1820620/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:1157586/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT < 1:5378458/50‑1 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT < 1:2275234/50‑1 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:4836118/1‑50 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:1512723/1‑50 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:4571883/1‑49 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:1276599/1‑49 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTC < 1:4547186/49‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:358960/1‑50 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC < 1:4239856/50‑1 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA > 1:219199/1‑49 CAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAA < 1:400105/50‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT < 1:4698068/50‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT < 1:4881641/50‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT < 1:5162475/50‑1 GTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATC > 1:873189/1‑50 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC < 1:3667381/50‑1 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC < 1:238564/50‑1 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC > 1:2680499/1‑50 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC < 1:2864192/50‑1 GAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 1:4957811/1‑50 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:3043903/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:4551714/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT < 1:4299014/49‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 1:6151443/1‑49 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 1:3622904/1‑49 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:3525171/50‑1 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > 1:3200552/1‑50 GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627468‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > NC_000913/1652762‑1652810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |