| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 75 [0] | [0] 73 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 73 (0.900) | 49/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > NC_000913/1979330‑1979377 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:1876525/1‑50AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:2779599/1‑50 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC < 1:1324216/50‑1 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC < 1:4518060/50‑1 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:737662/1‑50 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:2988010/1‑50 ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:259655/1‑50 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 1:385757/1‑50 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:3443984/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:3873592/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:5419636/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:5631150/50‑1 CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG > 1:6259723/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:3984732/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG < 1:396008/49‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG < 1:754565/49‑1 CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG > 1:5135707/1‑50 CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 1:4692704/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG > 1:5007502/1‑49 CTTTTTCACTGAGTTATTAAACATACTCGCAAGCGCGTCGCTACGCTAGC < 1:5741273/50‑1 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:2451821/1‑49 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:3510496/1‑49 TTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:2831598/1‑48 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA < 1:2524456/48‑1 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:478103/49‑1 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC < 1:921623/49‑1 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC < 1:831489/49‑1 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:6115486/1‑49 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC < 1:2102022/49‑1 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:4180287/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA > 1:5519661/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA < 1:5449706/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:6244089/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:2748690/1‑49 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA < 1:1047560/48‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA < 1:2601846/50‑1 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:3424442/1‑49 TAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:327757/1‑50 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG < 1:1794548/49‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:4504479/1‑49 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:2685401/1‑49 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG < 1:3368808/49‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 1:2875921/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 1:5439760/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 1:1002638/1‑49 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:713198/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATA < 1:1483776/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT > 1:703491/1‑49 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA > 1:6244730/1‑50 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA < 1:4389113/50‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC < 1:6136001/50‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC < 1:3645775/50‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC > 1:1568691/1‑50 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG > 1:5913051/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 1:6261571/48‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA < 1:2826162/50‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA < 1:3425098/50‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:1517994/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:6129865/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT < 1:4169262/50‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:743828/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT < 1:650730/50‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:4832081/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:4618023/1‑50 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG > 1:3252690/1‑50 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 1:4210496/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG < 1:3022594/50‑1 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA > 1:4143161/1‑50 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT > 1:1966838/1‑50 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:2461043/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT > 1:2489798/1‑50 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:4667425/50‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 1:3301030/1‑50 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 1:3283655/1‑50 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 1:4521135/1‑50 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > NC_000913/1979330‑1979377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |