| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 64 [0] | [0] 64 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 62 (0.750) | 42/98 | 0.2 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGGGAGGCTGCTCGGT > 1:5340954/1‑50TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGGGGCTTCTCGGT > 1:1157407/1‑50TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGT > 1:673386/1‑50TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGGGCGGCTGCACGGT > 1:4352054/1‑50 ATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT > 1:2423602/1‑50 ATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGT < 1:3234776/49‑1 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTC < 1:4702204/50‑1 TGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC > 1:3757999/1‑50 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCCGCTCGGGTCCG > 1:3588531/1‑50 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGT < 1:5003755/50‑1 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCG < 1:5756203/49‑1 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCG < 1:3758183/49‑1 AGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGT > 1:5139393/1‑49 AGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGT > 1:3595733/1‑49 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCCGTTCCGTAAC > 1:921408/1‑50 AGAAACTTCTCGAGGAACTGGCGGGTGCGCGGCTGCTCGGTTCCGTAACG > 1:4314021/1‑50 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG < 1:3048556/50‑1 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTT < 1:637767/50‑1 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGTT > 1:386339/1‑49 ACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTA < 1:1361805/50‑1 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATC < 1:2296911/48‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT > 1:772310/1‑49 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCAT < 1:4558481/47‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCAT < 1:4159960/47‑1 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA < 1:3138894/50‑1 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA > 1:301099/1‑50 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA < 1:5301310/50‑1 GGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT > 1:1545559/1‑50 GAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATC < 1:1637981/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC < 1:1623454/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC < 1:2829469/50‑1 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTA < 1:946492/50‑1 GGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAG > 1:1144439/1‑50 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG < 1:5744177/50‑1 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG < 1:1696463/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:3381291/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:1482172/1‑50 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:3546196/1‑50 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:3171743/1‑50 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:4082471/1‑50 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:2702439/1‑50 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT < 1:5281606/50‑1 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:6416243/1‑49 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA < 1:5368762/50‑1 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA > 1:5292842/1‑50 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA > 1:5063871/1‑50 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:5098508/1‑49 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA > 1:4864038/1‑49 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA > 1:5498975/1‑49 TGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:3998254/1‑50 GCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:4810268/1‑49 GCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:2450401/1‑49 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:1548492/49‑1 TCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA > 1:2345930/1‑50 TCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA > 1:749425/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:429137/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:5007591/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > 1:2037208/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT < 1:5543889/49‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:4729725/48‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:314779/48‑1 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC < 1:5593174/50‑1 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |